Mus caroli (Ryukyu mouse): 110298115
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Entry
110298115 CDS
T05910
Symbol
Hif3a
Name
(RefSeq) hypoxia-inducible factor 3-alpha isoform X1
KO
K09096
hypoxia-inducible factor 3 alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110298115 (Hif3a)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110298115 (Hif3a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_4
PAS_9
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
110298115
NCBI-ProteinID:
XP_021022792
Ensembl:
MGP_CAROLIEiJ_G0029252
UniProt:
A0A6P5Q0S5
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All DBs
Position
7:complement(16062473..16093261)
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AA seq
664 aa
AA seq
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MALGLQRVRSNTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLT
ISYLRMHRLCAAGEWNQVGKGGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLS
QLELIGHSIFDFIHPCDQEELQDALTPRPNLSKKKLEAPTERHFSLRMKSTLTSRGRTLN
LKAATWKVLHCSGHMRAYKPPAQTSPAGSPRSEPPLQCLVLICEAIPHPASLEPPLGRGA
FLSRHSLDMKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAV
TGQYRFLARTGGYLWTQTQATVVTGGRGPQSESIICVHFLISRVEETGVVLSLEQTEQHT
RRPPRLSASSQKGIPGNSVDSPAPRILAFLHPPALSEASLAADPRRFCSPDLRRLMAPIL
DGPPTAATPSTPQATRRPQSPLPADLPDKLAMGLENAHRLSTAQKNKTMETDLDIAQDPD
TLDLEMLAPYISMDDDFQLNSSEQLPKVHRRPPRVARRPRARSFHGLSPPIPEPSLLPRW
GSDPRLNCSSPSRGDRPTASLMPGTRKRALAQSSEDKGLELLETKPPKRSPRLEPGSFLL
PPLSLSFLLQGRQLPGNQQDPRAPLVHSHEPLGLAPSLLSLCQHEETVQPRNHFPPAAGL
GQPH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggggcttcagcgcgtgaggtcgaacaccgagctgcggaaggagaagtcgcgg
gacgcggcccgcagccggcgcagccaggagacggaggtgctgtaccagctggcgcacact
ctgccctttgcgcgcggcgtcagcgcgcacctggacaaggcctccatcatgcgcctcaca
atcagctacctgcgcatgcaccgcctctgcgccgcaggagagtggaaccaggtggggaaa
gggggagagccactggacgcctgctacctgaaggccctggagggtttcgtcatggtactc
accgccgagggagacatggcttacctgtcggaaaatgtcagcaagcacctgggcctcagt
cagctggagctcattggacacagtatctttgatttcatccatccctgtgaccaagaggaa
cttcaagacgccctgacccccaggccgaacctgtcaaagaagaagctggaagccccaaca
gagcgccacttttccctgcgaatgaagagcacgctcaccagcagagggcgcacgctcaac
ctcaaagcggccacctggaaggtgctgcactgctcaggacatatgagggcctacaagccc
cctgcacagacttcccctgccgggagccctcgctccgagcctcccctgcaatgcctggtg
cttatctgtgaagccatcccccacccagccagtctggagcccccgctgggccgaggggcc
tttctcagtcgccacagcctggacatgaagttcacatactgcgacgagaggattgcagaa
gttgctggctacagtcctgatgatctgattggctgttctgcctatgaatacatccacgct
ttggactctgatgcggtcagcaggagcatccacactttgttgagcaagggccaggcagta
acggggcagtatcgcttcctggcccggactggaggctatctgtggactcagactcaggct
acagtggtgacaggggggcggggcccccagtcggaaagtatcatctgcgtccacttcctg
atcagccgtgtagaagagaccggagtggtgctgtctctggaacaaactgagcaacatact
cgcagaccccctcggctgagtgcctcctcgcagaagggtatccctggcaacagtgtagac
tctcctgctccgcggatcctagccttcctgcaccctccggccctgagtgaggcctccctg
gctgctgaccctcgccgtttctgtagtccagacctgcgccgcctcatggcacccatcctg
gatggacctcccacagctgccacgcccagcaccccacaagctacacggagaccccaaagt
cctctcccggctgatctcccagataagttggcaatgggcttggaaaatgcgcacagactc
tccactgcccagaaaaacaagaccatggagacagatctagatatagctcaggaccctgac
actctggacttagagatgctggccccctacatctccatggatgatgacttccagctcaac
tccagcgagcaattgcccaaagtccaccgcagacctcccagggtggcccgcaggccccgt
gctcggagcttccatggcctgtcgcctcctatccctgagccctccctgctgccccgctgg
ggaagtgatccacgactgaactgttccagcccttccaggggggatcgccccacagcctcc
ctgatgcctggaacacggaagagggccttggcccagagctcagaggacaaagggttggag
ctgctggaaactaagcctcccaagcggtccccaagactagaacctggaagcttcctgctg
cctccgctcagcctgagtttccttctgcaaggtcgacaactcccagggaaccagcaggat
cccagagcccccctcgtgcattctcatgagcccttgggcctagctccctcgctgctctct
ctctgccagcatgaggaaactgtccagcccaggaaccacttcccgccagcagcaggcttg
ggccagccccactga
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