Mus caroli (Ryukyu mouse): 110298275
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Entry
110298275 CDS
T05910
Symbol
Trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
110298275 (Trpa1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcal04040
]
110298275 (Trpa1)
Ion channels [BR:
mcal04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
110298275 (Trpa1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
ANK_LRRK2
DUF7694
SchA_CurD
Motif
Other DBs
NCBI-GeneID:
110298275
NCBI-ProteinID:
XP_021023070
Ensembl:
MGP_CAROLIEiJ_G0013960
UniProt:
A0A6P5Q7X5
LinkDB
All DBs
Position
1:complement(10770781..10817331)
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AA seq
1125 aa
AA seq
DB search
MKRGLRRILRPEERKEVQGVVYRGVGEDMDCSKESFKVDIEGDMCRLEDFIKNRRKLSKY
EDENLCPLHHAAAEGQVELMELIINGSSCEVLNIMDGYGNTPLHCAAEKNQVESVKFLLS
QGANPNLRNRNMMSPLHIAVHGMYNEVIKVLTEHKATNINLEGENGNTALMSTCAKDNSE
ALQILLEKGAKLCKSNKWGDYPVHQAAFSGAKKCMELILVYGEKNGYSRESHINFVNHKK
ASPLHLAVQSGDLDMIKMCLDNGAHIDMMENAKCMALHFAATQGATDIVKLMISSYNGSS
DIVNAVDGNQETLLHRASLFDHHDLAEYLISVGADINSTDSEGRSPLILATASASWNIVN
LLLCKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFMQMQHIKELVMDEDNDGCTPLHY
ACRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGD
LHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLK
CTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILLNKKQASFLHIALHNKRKEVVLTT
IRSKRWDECLQVFTHDSPSNRCPIMEMVEYLPECMKVLLDFCMIPSTEDKSCQDYHIEYN
FKYLQCPLSMTKKVAPTQDVIYEPLTILNVMVQHNRIELLNHPVCREYLLMKWCAYGFRA
HMMNLGSYCLGLIPMTLLVVKIQPGMAFNSTGIINGTSSTHEERIDTLNSFPIKICMILV
FLSSIFGYCKEVIQIFQQKRNYFLDYNNALEWVIYTTSIIFVLPLFLNIPAYMQWQCGAI
AIFFYWMNFLLYLQRFENCGIFIVMLEVIFKTLLRSTGVFIFLLLAFGLSFYVLLNFQDA
FSTPLLSLIQTFSMMLGDINYRDAFLEPLFRDELAYPILTFGQLIAFTMFVPIVLMNLLI
GLAVGDIAEVQKHASLKRIAMQVELHTNLEKKLPLWYLRKVDQRSTIVYPNRPRHGRMLR
FFHYFLNMQETRQEVPNIDTCLEMEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISET
EDEDNHCSFQDRFKKERLEQMHSKWNFVLNAVKTKTHCSISHPDF
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcggcttgaggaggattctgcgcccggaggaaaggaaggaggtccagggcgtt
gtctatcgcggcgtcggggaagacatggactgctccaaggaatcctttaaggtggacatt
gaaggagatatgtgtagattagaagacttcatcaagaaccgaagaaaactaagcaaatat
gaggatgaaaatctctgtcctttgcatcacgcagcagcagaaggtcaagttgaactgatg
gaactgatcatcaatggttcttcgtgtgaagtgctgaatataatggatggttatggaaat
accccactgcactgtgctgcagaaaaaaatcaagttgaaagtgtaaagtttcttctcagc
caaggagcaaatccaaacctccgaaatagaaacatgatgtcaccccttcacatagctgtg
catggcatgtacaacgaagtgatcaaggtgttgactgagcacaaggccactaacatcaat
ttagaaggagagaatgggaacacggctttgatgtccacgtgtgccaaagacaacagtgaa
gctttgcagattttgttagaaaaaggagctaagctgtgtaaatcaaataagtggggagac
taccctgtgcaccaggcagcattttcaggtgccaaaaaatgcatggaattaatcttagta
tatggtgaaaagaacggctacagcagggaatctcacattaattttgtgaatcacaagaaa
gccagccctctccacctagcagttcaaagcggagacttggacatgattaagatgtgcctg
gacaacggtgcacacattgacatgatggagaatgccaaatgcatggccctccattttgct
gcaacccagggagccactgacatcgttaagctcatgatctcatcctataatggaagcagt
gatattgtgaatgcagttgatggcaatcaggagactctgcttcacagagcctcgttattt
gatcaccatgacctggcagaatacctaatatcagtgggagcagacatcaacagcactgat
tctgaaggacgctctccacttattttagcaacagcttctgcatcctggaacattgtgaat
ttgctcctctgtaaaggtgccaaagtagacataaaagatcatcttggacgtaactttttg
catttgactgtgcagcagccttatggactaagaaatttgcggcctgagtttatgcagatg
caacacatcaaagagctggtgatggatgaagacaatgatggatgcacacctctccattat
gcctgtaggcagggggtccctgtctctgtaaataacctccttggcttcaatgtatctatt
catagcaaaagtaaagataagaagtcacccctgcattttgcagccagttatgggcgcatc
aatacatgtcagagacttctgcaagacataagtgatacgaggcttttgaatgaaggggat
ctccatgggatgacccctctccacctggcagcaaagaatggacatgataaagtcgttcaa
cttctcctgaagaaaggggccttatttctcagtgaccacaatggctggactgctttgcat
catgcgtccatgggtgggtacactcagaccatgaaggtcattcttgatactaacttgaaa
tgcacagaccgactagatgaagaagggaacacagcactccactttgcagcacgggaaggc
catgccaaggctgttgcaatgcttttgagctacaatgctgacatcctcctgaacaagaag
caagcttcctttctgcatattgccctgcacaataagcgcaaggaagtggttctcacaacc
atcaggagtaaaagatgggatgagtgtcttcaagttttcactcatgattctccaagcaat
cgatgtccaatcatggagatggtagaatatctccccgagtgcatgaaagttcttttagat
ttctgcatgataccttccacagaagacaagtcctgtcaagactaccatattgagtataat
ttcaagtatctccaatgcccattatccatgaccaaaaaagtagcacctacccaggatgtg
atatatgagcctcttacaatcctcaatgtcatggtccaacataaccgcatagaactcctc
aaccaccctgtgtgtagggagtacttactcatgaaatggtgtgcctatggattcagagcc
catatgatgaacctaggatcttattgtcttggtctcatacccatgacccttcttgttgtc
aaaatacagcctggaatggccttcaattctactggaataatcaatggaactagtagtact
catgaggaaagaatagacactctgaactcatttccaataaaaatatgtatgattctagtt
tttttatcaagcatatttggatattgcaaagaagtaatccaaattttccaacagaaaagg
aattacttcctggattacaacaatgctctggaatgggttatctatacaaccagtatcatc
ttcgtgttgcccttgttcctcaacatcccagcgtatatgcagtggcaatgtggagcaata
gcgatattcttctactggatgaacttcctactgtatcttcaaaggtttgagaactgtgga
attttcattgttatgttggaggtgatttttaaaacattgctgagatcgaccggagtgttt
atcttcctcctattggcttttggcctcagcttttatgtcctcctgaatttccaagatgcc
ttcagcaccccattgctttccttaatccagacgttcagtatgatgctaggagacatcaat
tatcgagatgccttcctagaaccattgtttagagatgagttggcatacccaatcctgacc
tttgggcagcttattgccttcacaatgtttgtcccaattgttctcatgaacttactgatt
ggcttggcggttggggacattgctgaggtccagaagcatgcgtcattgaagaggattgct
atgcaggtggaacttcataccaacttagaaaaaaagctgccactctggtacttacgcaaa
gtggatcagaggtccaccatcgtgtatccaaatagacccaggcacggccggatgctacgg
ttttttcattattttcttaatatgcaagaaacacgacaagaagtaccaaacattgacaca
tgcttagaaatggaaatattgaaacagaaatatcggctgaaggacctcacttctctcttg
gaaaagcagcatgagctcatcaaactcatcatccagaaaatggagatcatctcagagaca
gaagatgaagataaccattgctctttccaagacaggttcaagaaggagaggctggagcag
atgcatagcaagtggaattttgtcttaaacgcagttaagactaaaacacattgttctatt
agccacccagatttttag
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