Mus caroli (Ryukyu mouse): 110298480
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Entry
110298480 CDS
T05910
Symbol
Shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
110298480 (Shank1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
110298480
NCBI-ProteinID:
XP_021023426
Ensembl:
MGP_CAROLIEiJ_G0029655
UniProt:
A0A6P7RFV0
LinkDB
All DBs
Position
7:46254282..46302573
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AA seq
2167 aa
AA seq
DB search
MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGANKDVKNNNGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGASSSGTPGPTSGSQGQSQPSAPSTK
LSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRPSSSGTPRDGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLSKGEKIKVLSIGEGGFWEGQVKGRV
GWFPSDCLEEVANRSQEGRQESRSDKAKRLFRHYTVGSYDSFDAPSLIDGIDSGSDYIIK
EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD
FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKASQQAKRLPPP
AISLRSKSMTSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDEILAAAQQT
ISASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQKSIG
AAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGG
PFNPGSGGPLPASSPSSFDGPSPPDPRSGGREKSLYHSGALPPAHHHPPHHHHHHAPPPQ
PHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTSGAPSPSHHSSSGG
SSGPAQAPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGSLPPASSPT
SPALPRSEPPPAGPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAVGGGS
SPSPAPATSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTL
FLSTDAGDEDGGDSGLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESGGSSGGYGAYAAG
SRAYGGSGSSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGVTPQP
PPRPPSPRYDAPPPTLHHHSPHSPHSPHARHEPVLRLWGDPARRELGYRAGLGSQEKALT
ASPPAARRSLLHRLPPTAPGVGPLLLQLGPEPPTPHPGVSKAWRTAAPEEPERLPLHVRF
LENCQARPPPAGTRGSSTEDGPGVPPPSPRRVLPTSPTSPRGNEENGLPLLVLPPPAPSV
DVDDGEFLFAEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPSPATPLPAAPPPAVAAAP
PTLDSTASSLTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAPPAPQPGPDPPPGTDSG
IEEVDSRSSSDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGTELLDTYVAYLDG
QAFGGSGTPGPPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPTVSVTGAGT
DGLLALSACSGPSTAGVAGGPVAVEPEVPPVPLPTASSLPRKLLPWEEGPGPPPPPLPGP
LSQPQASALATVKASIISELSSKLQQFGGASTAGGALPWARGGSGGSTDSHHGGASYIPE
RTSSLQRQRLSEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGATSPSAS
SASASTRHLQGVEFEMRPPLLRRAPSPSLLPASDHKVSPAPRPSSLPILPSGPLYPGLFD
IRSSPTGGAGGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGAKP
LGFWTKFDVADWLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRA
LKFFLER
NT seq
6504 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgacaagcgaggacgaggaacgacacagtgccagcgagtgtccc
gaggggggctcagaatcggacagctccccagacgggccaggaagaggcccccaggggact
cggggccggggcagcggagcacctggtaacctggcctctacccgaggcctccagggacgc
tccatgtctgtccccgacgacgcccacttcagcatgatggttttcaggattggcatccct
gacttgcatcagacgaaatgcctacgcttcaacccagatgccaccatctggacagccaaa
cagcaagtactctgtgccctgagcgagagtcttcaggacgtgcttaactatggactgttc
cagccagccacctcaggccgggatgccaacttcttggaggaggagaggcttctaagagag
taccctcagtcctttgagaaaggggtaccctacctggagttccgctacaagacccgagtc
tacaaacagaccaacctggatgagaaacagctggccaagctgcacacgaagaccgggttg
aagaagttcctggaatatgtgcagcttgggacgtctgacaaggtggcgaggctgctggac
aaggggctggaccccaactaccacgactcagattcaggagagacacctttgaccctggcg
gcccaaactgaaggctcagtagaggtgattcggacgctgtgcctgggcggggcgcatata
gacttcagggcccgggatggcatgacagcgcttcacaaagctgcatgtgcccggcactgc
ctggcactcacggcacttctggaccttgggggctcccccaactacaaggaccgacgaggg
ctgacccccctgttccacacagctatggtggggggagacccccgctgctgcgagctactt
ctgtacaacagggcccagctgggcattgcagatgagaacggctggcaggaaatccatcag
gcctgccaacgagggcactctcagcacctggaacacctgctcttctatggggctgagcct
ggagcccagaatgcctcaggaaacacggccctgcacatctgtgctctctacaacaaggag
acctgtgccaggatcctcctttatcgtggagcaaacaaggatgtgaaaaataacaatgga
cagacacccttccaggtggctgtgattgctgggaattttgagctgggggaactgattcgt
aaccatcgggaacaggatgtggtacctttccaggagtcccccaagtatgcagcccggcgt
cggggacccccaggcgcagggctgactgtacccccagcgctgctgcgagctaacagcgac
acgagcatggcgctgcctgattggatggtgttttcggccccaggggcctcatcctctggg
acccctggccctacctcaggatcccagggccagtcacagccctcggcccccagcaccaag
ctcagtagtgggaccctcagaagtgccagcagcccccgaggagcccgggcacgctcccca
tcccgggggagacatcctgaagacgccaagagacaacctcgaggccggcccagctccagc
gggacaccccgagatgggccggctgggggaactgggggctcagggggccctgggggctcc
ctgggcagcagaggcagacgtaggaagctctattcagcggtacccggtcgctccttcatg
gcggtgaagtcctaccaggcgcaaggcgagggggagatctctctgagtaaaggcgaaaag
atcaaagtgctcagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgagtt
ggctggttcccttctgactgcctagaagaggtggcaaaccgttcccaggagggaagacaa
gaaagccgaagtgacaaggcaaagagactcttcaggcattacacagtgggctcctatgac
agcttcgatgccccaagtctgatcgatgggattgactcagggagtgattacatcatcaag
gagaagacagtcttactgcagaagaaggacagtgaggggttcgggttcgtgctccggggg
gccaaggcgcagacccccatcgaggaattcacccccaccccggccttcccggcgctgcag
tacctcgagtctgtggacgagggtggcgtggcatggcgggctggactacgaatgggagac
ttcctcatcgaggtgaacggacagaatgtagtgaaggttggccaccgtcaggtggtcaac
atgatccgacagggaggcaacacactgatggtcaaggtggtgatggtgaccagacaccca
gacatggacgaggctgtccacaagaaagcatcccagcaggctaagcggctcccgccccca
gccatctccctgcgttccaagtctatgacctcagagctggaggaaatggtctccccctgg
aagaagaaaattgaatacgaacaacagcctgcagcagtgcccagcatggagaaaaagcgg
actgtgtatcagatggcactcaacaaactggatgagatcttggctgcagctcagcagacc
atcagtgcaagtgagagtcctgggcctggcggcctcgcatccctgggcaagcaccgaccc
aaaggattctttgccactgagtcgagctttgatcctcaccaccgctcccagccaagttat
gaccggccttctttcctgcctccgggacctggccttatgctccggcagaaatctatcggg
gctgcggaagatgacagaccctacctagcacccccagccatgaaattcagtcgtagcctg
tcagtccccggttcagaggacatacccccaccacccactacatccccaccagagccgccc
tatagcacacctccggccccctcctcttccggccgcctcactccctcgcctcggggagga
ccctttaaccctggttccgggggtccccttcccgcctcctccccttcatctttcgatggg
ccatctcctcctgacccccgtagtgggggccgagagaagagcctatatcacagtggcgcc
ctaccccctgcccaccaccacccacctcatcaccaccatcatcacgccccacctcctcag
ccccaccatcaccatgcgcatcctcctcacccaccggagatggagacaggaggttccccc
gacgatcccccacctcgattggccctgggaccccagcccagccttcgaggctggcgaggt
ggaggacccagcccgacctcgggggccccatcaccttcccaccacagtagcagcggaggc
agcagcggtcctgctcaggctcccgccctgcgctacttccagctgcccccgagggcggcc
agtgcggctatgtacgtaccagcccgctccggccgcggtcgcaagggcccgctggtcaag
cagaccaaagtggaaggcgagccccaaaagggcagcctccctcccgcgtcctctccaaca
tccccggcgttgcctcggtccgaaccacctccggccgggccgtcggagaaaaattccatc
cctatccctaccatcatcatcaaagccccatctaccagtagcagcggccgcagtagccag
ggaagcagcacagaggctgagccccccacccagcccgacggcgcggtcggcggcggatcc
tcgcctagccctgcacctgccacgtcccctgtgccgccgtccccgtcgcccgtgcccacc
cctgcgtcacccagcggcccggccaccctggatttcactagccagtttggagcagcccta
gtgggcgcggcgcggagggagggaggctggcagaacgaagcccggcggcggtccacgcta
ttcctgtccaccgacgcaggagatgaggatggaggtgacagcgggctgggcccgggggcg
cccccgggtccccggctgcgccattccaaatccattgatgaaggcatgttctccgccgag
ccgtacctccggctggagtcggggggcagcagcgggggctacggggcctacgcagcgggc
agccgagcctacgggggcagcgggagcagcagcgccttcaccagcttcctccccccacgg
cccctggtgcatccgctgaccggcaaagccttggatcccgcctctccgctggggctggcc
ttggccgcccgggagcgggccttgaaagagtcctcggagggcggggtcactcctcagccg
cccccaagacctccatcaccacgctacgacgccccaccgcccacccttcaccaccactcg
ccccattcaccccattcgccacatgcgcgtcacgagccagtgttgcgcctctggggagac
cccgcgcgccgggagctggggtaccgggcaggcctagggagtcaggagaaggcccttacc
gctagtccacctgcagctcgccgctccctactgcaccgtcttcccccgacggctcccggg
gtcgggccgctcctgcttcaattggggccggagcccccaactccccatcctggggtgagc
aaggcctggcgcacagcagcccccgaggagccagagcggctgcctctgcatgtgcgattc
cttgagaattgccaggcccggcctcctccagctggcacgagagggtcctccactgaagat
gggcctggggtcccgcctcccagccctcgcagagtcttgccaacctctcccacctccccg
cgaggcaacgaggagaacggccttccgctactggtcctgccaccgccggccccttcggtg
gatgtggacgacggcgagttcttgtttgcggagccgctgcctccacccctggagttttcc
aatagcttcgaaaagccagagtcgcctctcacacccgggcctccccacccgctgcctgac
cctccctccccagctacccctctacccgcagccccacctccggctgtggccgccgcccct
cccaccttggactccacagcatccagcctgacctcttacgacagcgaagtggccacgctg
acccagggggctcccgcggctcctggggaccctcctgctccaggcccgccggccccggca
gctccagctcctccagcaccgcagccaggccccgaccctccacctggcacagattctgga
attgaggaggtggacagtcggagcagcagcgatcacccgctggagaccatcagcagcgca
tccacactcagcagcttgtccgccgaaggaggaggcaacacagggggcgtggctgggggc
ggggccggggtggccagcgggacggagctcctggacacctacgttgcctacctggatggc
caggccttcgggggcagtgggactcctggcccaccatatccccctcagctcatgactcct
tctaagctccggggcagggcgcttgggactagtggaaatttgagacctggtcccagtggg
ggacttcgagatcctgtcacccccaccagccccaccgtctctgtgaccggagctggaaca
gatgggctactggccttgagtgcttgttctggaccctcaacggcaggtgtggcagggggt
cccgtggcggttgagccagaagtcccgcctgtacctttgcccactgcctcatccctgcct
cggaagctactaccgtgggaggagggtccgggaccaccaccaccacccctgccagggccc
ctgtcccagcctcaggcctctgccttggccacggtcaaagccagcatcatcagcgaactc
agctccaagctccagcagtttggtggggcctctaccgcgggaggagctctgccttgggct
cggggaggcagcgggggcagcacagacagccaccacggaggagccagttacatcccagag
aggacctcctccctgcagcggcagaggctctccgaagactcccagacctctctcctctcc
aaacccagcagcagcatctttcaaaactggcctaaaccccctctgccaccactccccacc
ggatctggggtctcctcttcaacagctgcagccccaggagctacatccccttcagcctca
tctgcctcagcttccaccagacacctgcagggtgtggaatttgagatgcggcctccgctg
ctccgccgggcacccagcccctcgctgctgcctgcctcggatcacaaggtcagcccagcg
cccaggccctcttctttgcccatcctgccttcaggacccctctacccgggcctcttcgac
atccgtagctctccgaccggaggggcaggaggctcggctgaccccttcgctcccgtcttt
gtgccaccacaccccgggatatctgggggtcttggaggagccttgtctggggcctctcgc
tccctatcacccacccgcctgctctcgctgcccccggacaagccgttcggcgccaagcct
ctagggttctggaccaagtttgacgtcgctgattggctggagtggctgggcttatcagag
catcgagcccagttcctggaccacgagattgatggctcccatctgcccgccttgaccaag
gaggactatgtggacctgggcgtgaccagggtgggccaccgtatgaacattgaccgggct
ctcaaatttttcctggagaggtga
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