KEGG   Mus caroli (Ryukyu mouse): 110298588
Entry
110298588         CDS       T05910                                 
Symbol
Atg16l2
Name
(RefSeq) autophagy-related protein 16-2 isoform X4
  KO
K20868  autophagy-related protein 16-2
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal04140  Autophagy - animal
mcal04145  Phagocytosis
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    110298588 (Atg16l2)
   04140 Autophagy - animal
    110298588 (Atg16l2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mcal04131]
    110298588 (Atg16l2)
   03029 Mitochondrial biogenesis [BR:mcal03029]
    110298588 (Atg16l2)
Membrane trafficking [BR:mcal04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    110298588 (Atg16l2)
 Others
  Specific organelles associated proteins
   Auto phagosome
    110298588 (Atg16l2)
Mitochondrial biogenesis [BR:mcal03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    110298588 (Atg16l2)
SSDB
Motif
Pfam: ATG16 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR36-Utp21_2nd DSE1_N WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_TEP1_C CFAP251_N Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_NOL10_N WD40_RFWD3 NBCH_WD40 Beta-prop_NWD2_C IFT57 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 110298588
NCBI-ProteinID: XP_021023574
Ensembl: MGP_CAROLIEiJ_G0030059
UniProt: A0A6P5Q1W2
LinkDB
Position
7:complement(103963302..103976300)
AA seq 623 aa
MAGPGAPCDPCAPAAVWKRHIVRQLRHRDRTQKALFLELVPAYNNLLEKAELLAKFSEKL
KSEPKDTISTRHEDWREEVSGTGPDQVSSPASLRVKWQQEKKGLQLVCGEMAYQVVKKSA
ALDTLQSQLEERQDRLEALQACVVQLQEARAQQSRQLEERQAENAAQREAYETLLQQAAH
QEAALRRLQEEARDLLEQLVQRKARAAAERNLRNERRERANQALVSQELKKAAKRTVSIS
EIPNTLEDGTKEETVALAPAALPEFSESETCEKWKRPFRSASATSLTLSRCVDVVKGLLD
FKKRRGHSVGGAPEQRYQSIPVCVSAQIPSQAQDVLDAHLSEVNAVCFGPNSSLLATGGA
DRLIHLWNVVGGRLEANQTLEGAGGSVTSVDFDPSGSQVLAATYNQAAQLWKVGETQSKE
TLSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGDHII
ISGHNDQKIRFWDSRGPHCIQVIPVQGRVTSLHLSYDQLHLLSCSRDNTLKAIDLRISNI
RQVFRADGFKCSSDWTKAVFSPDRSYALAGSSNGDLYIWDVNTGKLETSLQGPHCTAVNA
VAWCFSGNHVVSVDQGRKVVLWH
NT seq 1872 nt   +upstreamnt  +downstreamnt
atggcaggacccggcgccccctgcgatccctgcgcgcccgccgctgtctggaagcgccac
atcgtgcggcagctgcggcatcgggaccgcacgcaaaaggcgctcttcctggagctagtg
ccggcttataacaatctcctagagaaggctgaactgctagccaagttctcagaaaagttg
aagtccgaaccaaaggataccatctccacccgacatgaggactggagggaggaggtctca
gggacaggccctgaccaagtctcatcaccagcctctctgagggtgaagtggcagcaggag
aagaaggggctgcagctggtctgtggtgagatggcctaccaggtggtgaagaagagcgca
gccctagacaccctgcagtcacagctggaggagcggcaggacaggctggaagccctgcag
gcctgcgtggttcagctacaggaggcgcgggctcagcagtcccggcagctggaggaacgg
caagcagagaacgcggcacagagagaagcctacgagacgctgctccagcaagcagcacac
caggaggcggcactgcgcaggctccaggaagaggcacgcgacttgctagagcagcttgtg
cagcgtaaggcgcgcgccgccgctgagcgcaatctacgtaatgagcgtagagagagggcc
aaccaggctctggtgtcccaggagctgaagaaagcggctaagcggactgtgagcatcagc
gagatcccaaacactctagaagatgggaccaaagaggagactgtggctctagctcctgcc
gctctgcctgagttctcggagagtgagacttgtgaaaaatggaagaggcctttcaggtct
gcctcggccacctccctgacactgtcccgctgtgtggatgtggtgaaggggctgttggac
ttcaagaaaagaagaggtcactcggttgggggcgcacctgagcagcggtaccaaagcatc
cctgtgtgtgtgtctgcccaaattccctcccaggctcaggatgtcttggatgcccatctc
tctgaggtcaatgctgtttgttttggccccaacagcagcctcctggccactggaggggct
gaccggctgatccacctctggaatgttgtaggaggtcgcctggaggccaaccagaccctc
gaaggagctggcggcagcgtcaccagtgtggactttgacccctcaggctcccaggttttg
gcagctacttacaaccaggctgcccagctctggaaggtgggagagactcagtccaaggaa
acattgtccggacacaaggacaaagtgacagctgccaaattcaagctaacaaggcaccag
gcagtgactgggagccgagaccggacagtgaaggaatgggacctgggccgcgcctactgt
tccaggactatcaatgtcctttcctactgcaatgacgtggtgtgtggggaccatatcatc
atcagtggccacaatgaccagaagatccggttctgggacagcaggggccctcactgcatc
caggtcatccctgtgcagggccgggttacctccctgcacctcagctatgaccagctgcat
ctgcttagctgttcccgagacaacacactcaaggctatcgacctgcgaatcagcaatatc
cgacaggtgttcagggcagatggcttcaagtgcagttctgactggaccaaagctgtgttc
agccctgacagaagctacgcactggcaggctcctcaaatggcgacctgtacatctgggat
gtgaacaccgggaaactggagaccagcctacagggaccccactgcactgctgttaatgcc
gtggcttggtgcttctccgggaaccacgttgtgagtgtggaccaaggcaggaaggtggtg
ctctggcattga

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