Mus caroli (Ryukyu mouse): 110299629
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Entry
110299629 CDS
T05910
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110299629 (Upf1)
03015 mRNA surveillance pathway
110299629 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110299629 (Upf1)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110299629 (Upf1)
5.6.2.5 RNA 5'-3' helicase
110299629 (Upf1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110299629 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110299629 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110299629
NCBI-ProteinID:
XP_021025017
Ensembl:
MGP_CAROLIEiJ_G0031142
UniProt:
A0A6P5QCC0
LinkDB
All DBs
Position
8:complement(62541213..62563003)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKE
QKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKTK
TGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacactcaccttcttggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagtttgagttcaccgatttcaccctc
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggcccgggcggagcg
ggcgcaggcggcgcggccggccagctcgacgcacaagttggaccagagggcatcttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagttgctagctgagctgaacttc
gaggaagatgaagaggacacatactacactaaggacctcccagtccacgcctgcagttac
tgcggaatccatgatcctgcctgcgtggtttactgtaataccagcaagaagtggttctgc
aatggtcgaggaaatacttctggcagccacattgtgaatcaccttgtgagggcaaaatgc
aaggaagtgacgctgcacaaggatgggcctctgggcgagaccgtgctggagtgctacaac
tgtggctgccgcaacgtcttcctgctgggcttcatccctgccaaggccgactctgtggtg
gtgctgttgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctgatccaggaccggtgctttctgtcatggctggtcaagatt
ccctccgagcaggagcagcttcgagcacggcagatcacggcacagcagatcaacaagctg
gaagagctctggaaggaaaatccttcagccactctggaggacctggagaagccaggtgta
gacgaggagccacagcacgtgctcctgcggtacgaggatgcttaccagtaccagaacatc
ttcgggccactggtcaagctggaggctgactatgacaagaagttgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggggacctggcgcccctgtgg
aaggggattggccacgtcatcaaggttcctgataattatggtgatgagattgctattgag
ctccgcagcagcgtgggtgcccctgtggaagtgacccacaacttccaagtggattttgtg
tggaagtcaacctcttttgataggatgcagagtgcactgaaaaccttcgctgtggacgag
acctctgtgtcaggatatatttaccacaagctgctgggccacgaggtggaggatgtggtc
atcaagtgccagctgccaaagcgcttcacagctcaggggctccctgacctcaaccactct
caggtgtatgctgtgaagaccgtgctgcagagaccactcagcctcatccagggccctcca
ggcacaggcaagactgtgacatcagccactattgtctaccaccttgctcggcagggcaat
gggcctgtgctggtctgtgctccaagtaacatcgctgtggaccagctcacagagaagatc
caccagacaggactgaaggtcgtacggctctgtgccaagagccgtgaggccattgactcc
ccagtgtccttcctggctttgcacaaccagatcaggaacatggacagcatgcctgagctg
cagaagctgcagcagctaaaggatgagacaggcgagctgtcatctgcagatgagaagcgg
taccgggcgcttaagcgcacagctgagagagaacttctcatgaatgcagatgtcatatgc
tgcacatgtgtgggtgctggtgacccgaggctggccaagatgcagttccgttccatcctc
attgatgagagcacccaggccactgagcctgagtgcatggtgcctgtagtccttggggcc
aagcagctgatcctcgtgggtgaccactgccagctgggcccagtggtgatgtgcaagaag
gcagccaaggccggactgtcacaatcgctcttcgagcgcttggtggtgctgggcatccgg
cccatccgcctgcaggtgcaataccgcatgcaccctgcactcagcgcctttccgtccaac
atcttctacgagggctcattgcagaatggcgtcactgcagcggatcgtgtcaagaaaggc
tttgacttccagtggccacaacctgacaagcctatgtttttctacgtgacacagggccag
gaggagattgccagctctggcacatcctacctcaacaggacggaggcagccaatgtggag
aagataactacgaagctgttgaaggcaggtgcaaagcctgaccagatcggcatcatcacc
ccctatgagggccagcgctcctacttggtgcagtacatgcagttcagcggctccctgcac
acaaagctctaccaggaagtggagattgccagtgtggacgccttccagggccgggagaag
gacttcatcattctgtcctgcgtgcgcgccaatgaacatcagggcattgggttcctaaac
gacccccggcgtctgaatgtggctctcaccagagcaagatatggcgtgatcattgtgggt
aacccaaaggccctgtcgaagcagcccctgtggaaccacctgctgagctactacaaggaa
cagaaggcgctagtggaagggccgctcaacaacctacgtgagagcctcatgcagttcagc
aagcctcgcaaacttgtcaacactgtcaacccgggggcccgcttcatgactactgccatg
tatgatgcccgtgaggccatcatccccgggtctgtttatgaccgcagcagccagggccgg
ccctcgaacatgtacttccagacccatgaccagattagcatgatcagcgcaggccccagc
catgtggctgccatgaacatccccattcccttcaacttggtcatgcctcccatgccacca
cctgggtacttcggacaggccaatgggccagctgctggtcggggcaccccaaaaaccaag
actggccgtgggggccgccagaagaaccgctttgggcttcctgggcccagccagaccacc
cttcccaacagccaggccagccaggacgtggcctcccagcccttttcacagggtgccctc
acacagggttacgtgtccatgagccagccctcccagatgagccagcctggcctctcccag
ccagaactgtcccaggacagctacctcggtgatgagtttaaatcacagattgacgtggca
ctctcacaagactccacataccagggagagcgggcataccagcacggcggggtcaccggg
ctgtcccagtactag
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