Mus caroli (Ryukyu mouse): 110299731
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Entry
110299731 CDS
T05910
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110299731 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110299731 (Edc4)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110299731 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
110299731 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
110299731
NCBI-ProteinID:
XP_021025183
Ensembl:
MGP_CAROLIEiJ_G0031500
UniProt:
A0A6P5Q0L2
LinkDB
All DBs
Position
8:97014893..97026151
Genome browser
AA seq
1407 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDSNS
TNKPGIRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTALNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGTESSHGAGALESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHTA
HEDFTAFGESRPELGSEGLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPTASLQQISASPSSSSSSSSSSSSSSSSSSSSLTAVSAVSSSSAMDPSLPSRPPEELTL
SPKLQLDGSLTLNSSSSLQASPRSLLPGLLPGPADKLISKGPGQVSTAASALSLDLQEVE
PLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAAS
ALHLLSPRPRQGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEVATPDSQVWPTAPDIT
RETCSTLTESPRNGLQEKHKSLAFHRPPYHLLQQRDSQDTSAEQSDHDDEVASLASASGG
FGSKIPTPRLPSKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVAEPPEDWPALI
WQQQRELAELWHNQEELLQRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQ
RGGQLQEQLTQQLSQALSSAVAGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKL
TAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMF
QQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSS
SVRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPV
PSAHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLS
QPVLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQ
ADPHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacattgaggacgccacgcagcatctgcgggacatcctc
aaactggaccggcccgccggaggttccaatgctgaaagccaaaggccatccagtgcctac
aatggagacctcaatgggctcctggtccccgacccgctcagttcaggtgatagtaactca
acaaacaaacctggtatacggaccatgcctcccattaacctgcaggaaaagcaggtcatt
tgcctctctggagatgacagctccacctgcattgggattttagccaaggaagtggaaatt
gtggccagcagtgattccagcatttccagcaaggctcgggggagcaacaaggtgaaaatc
cagcctgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgcagtg
tctaactccttcttggcatacgccattagggctgccaacaacggctcagcaatggtccgt
gtgatcagtgtcagcacttcggagcggaccctgctcaagggtttcacaggcagtgtggct
gatcttgcttttgcacacctcaactctccacagctcgcctgcctggatgaggctggcaat
ctttttgtgtggcgcttggctctggttaagggtaaaattcaagaagagattttagtccat
atccggcagccagagggtacagcgctgaaccacttccgaaggatcatctggtgccctttc
atccccgaggagagtgaggactgttgtgaggagagcagcccgacagtggccctgctgcat
gaggaccgggctgaggtgtgggacttggatatgcttcgctccagccacaacacctggcct
gtggatgtcagccaaatcaagcaaggctttattgtggtgaaaggccatagcacgtgccta
agtgaaggagccctctcacctgatgggactgtcctggctaccgcaagccatgatggcttt
gtcaagttctggcagatctatattgaaggtcaggatgagccaaggtgtctgcatgaatgg
aagcctcatgatgggaggcctctttcttgcctcctgttctgtgataaccataagaaacag
gatcctgaggtcccgttctggaggttcctcattaccggtgctgaccagaatcgagagctg
aagatgtggtgcacagtgtcctggacctgcctgcaaaccattcgcttctccccggatatc
ttcagctcagtgagtgtgcctcccagcctcaaagtttgcttggacctctcagcagagtat
ttgattcttagtgatgtgcaacgaaaggtcctctatgtgatggagctgctgcagaaccag
gacgagggccgcgcgtgctttagttctatctctgagttcctgctcacccaccctgtgctg
agctttggcatccaggttgtcagtcgctgccggctacggcacactgaggtcctgcctgct
gaggaggagaatgacagtctggggaccgagagttcccatggagctggtgccttggaatcc
gcagctggtgtgcttatcaagctcttttgtgtgcacactaaggcactacaagatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggccccactctctacccacactgcc
cacgaggacttcacagcatttggagagtctcgacctgaactaggctccgaggggctagct
tcagctgctcatggttcccagcctgacctgcggcgcattgtggaactgcctgctcctgca
gacttcctcagtctgagcagtgagaccaagcccaagttgatgacacctgatgctttcatg
acacctactgcctccctgcagcagatctctgcatcccctagtagtagcagcagcagtagc
agcagcagcagtagcagcagcagcagcagcagcagctctctaacagctgtgtctgctgtg
agcagctcctcagccatggacccctccttgcccagtagaccacctgaggagctgaccttg
agccccaagctgcagctagatggcagcctgacgctaaacagcagcagcagcctgcaggca
agccctcgaagcctccttccaggcctgctcccaggcccagctgacaagttgatttccaag
ggacctggtcaggtatccactgctgcctctgcattgtccttggatttgcaggaagtagag
ccattagggctaccccaggcctccccaagtcgaacccgttctcctgatgtgatctcctca
gcatccactgccctgtcccaggacattcctgaaatcgcatctgaggccctgtcccgtggc
tttggctcctctgttcctgagggcctcattgagccagacagcatggcctcagctgcctca
gcactacacttactctctcctcggcccaggcaaggccctgagcttggctctcaactgggt
ctggatggaggccctggagatggggataggcatagtaccccttccctgctggaagcagcc
ctgacccaggaagttgcaacccctgacagtcaagtctggcctacggcacctgacattact
cgtgaaacctgtagcacactgacagaaagccccaggaatggcctccaggaaaagcacaaa
agtctggctttccacaggccaccttatcacttgctgcagcagcgtgacagtcaagacaca
agtgctgagcaaagtgaccatgatgatgaggttgccagccttgcctctgcctcaggaggt
tttggcagcaaaattcctactccacggctgccttccaaggattggaagaccaagggatcc
cctcggacgtcacctaagctcaagagaaaaagcaagaaggatgatggggattcagctgtg
ggatcccggctcacagagcaccaggtggcagagccccctgaagactggccagcactaatt
tggcagcagcaaagagagctggcagagctatggcacaaccaagaagagctgctacagcgt
ctctgtgcccagcttgaaggccttcagagtactgtcacagaccatgtagagcgtgccctg
gagacgcggcatgagcaggagcaacggcggctggaacgggcactggctgaggggcagcaa
cggggtgggcagctgcaggagcagctgacacagcagctatcccaggcgttgtcttcagct
gtggctgggcggctagagcgcagtgtaagggatgaaatcaagaaaacggttcctccatgt
gtctccagaagtctggagcctgttgcaggccaactaagcaactcagtggctaccaagctt
acagctgtggaaggcagcatgaaagagaatatctctaagctactcaagtccaagaactta
acagatgccattgcccgagcagctgcagacacgttacagggaccaatgcaggctgcctac
cgggaagccttccagagtgtggtactgccagcttttgagaagagttgccaggctatgttc
cagcaaatcaatgacagctttaggctgggcacacaggaatatttgcagcagctggagagt
cacatgaagagccggaaggcccgtgaacaagaagctagggagcctgtgctggcccagctt
cggggcctggtcagcacactgcagagtgccactgagcagatggcggccactgtatctagc
agtgttcgggccgaggtgcaacaccagctgcatgtggctgtgggcagcttgcaggagtca
atcttagcacaagtacaacgcattgtcaagggtgaagtgagtgtggcacttaaggagcag
caggccaccgtcacttccagcatcatgcaggctatgcgttcagctgctggcacacctgtc
ccctctgcccaccttgactgccaggcccaacaagcccatatcttgcagttactgcagcag
ggccacctcaatcaggccttccagcaggcgctgactgctgctgatctcaatctggtgctg
tatgtgtgtgaaactgtcgacccagcccaggtttttgggcagccgccctgtccactatcc
cagccggttctcctttccctaatccagcagctagcatctgaccttggaactagaagtgac
ctcaagctcagctacttggaagaagctgtgatgcacctggaccacagcgatcccatcact
cgagaccacatgggctctgtcatggctcaggtgcgccagaagctcttccagttcctgcag
gctgatccacacaactcacttggcaaagctgcccgccgcctcagcctaatgttacacggc
cttgtgacccctagcctcccttag
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integrated database retrieval system
