KEGG   Mus caroli (Ryukyu mouse): 110299929
Entry
110299929         CDS       T05910                                 
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110299929 (Taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcal03021]
    110299929 (Taf5l)
   03036 Chromosome and associated proteins [BR:mcal03036]
    110299929 (Taf5l)
Transcription machinery [BR:mcal03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     110299929 (Taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     110299929 (Taf5l)
Chromosome and associated proteins [BR:mcal03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     110299929 (Taf5l)
    STAGA complex
     110299929 (Taf5l)
    TFTC complex
     110299929 (Taf5l)
    SAGA complex
     110299929 (Taf5l)
    SLIK complex
     110299929 (Taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Tricorn_2nd Beta-prop_DCAF4 Beta-prop_SPT8 RMC1_N Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR19_1st PEP5_VPS11_N WD40_like PROPPIN Beta-prop_IP5PC_F WD_LRWD1 Ge1_WD40 Nbas_N ODR4-like
Other DBs
NCBI-GeneID: 110299929
NCBI-ProteinID: XP_021025555
Ensembl: MGP_CAROLIEiJ_G0031701
UniProt: A0A6P5Q939
LinkDB
Position
8:complement(115157214..115183716)
AA seq 589 aa
MKRVRTEQVQVAVSCYLKRRQYIDSEGPLKQGLRLSQTPEEMAANLTVQSESGCTNAVSA
APCQAEPQQYEVQFGRLRSFLTDSDSQYSREVMPLLYPLFVYLHLNLVQSGPKSTVESFY
SRFHGMFLHNASQKDVIEQLQTTQTIQDILSNFQLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRTESSSLEPPEVPSPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHHVDTSRIRLACDTLEEEENEEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR
STCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgtgtgcgcacggagcaggttcaggtggcagtgtcctgctacctcaaacgccgg
cagtacatagactcagaaggccctttgaagcaaggcctgagactctcacagacccctgag
gagatggcggccaacctcacagtccaatcagaatctggttgtaccaatgcggtgtctgca
gccccatgccaggcagagccccagcagtatgaagtgcagtttggacgcctgaggagcttt
cttactgattctgactcccagtacagccgtgaagttatgcctctcctctaccctctcttt
gtctacctccacctcaacctggtccagagtggccccaagagcactgtggaaagcttctat
agccgcttccatgggatgttcctgcacaatgcaagtcagaaggacgtcatcgagcagctg
cagaccacgcaaaccatccaggacattctgtcaaacttccagcttcgtgcattcctggac
aacaagtatgtcgtccgtctccaggaagatagctacaattaccttatccgctacctccaa
agcgacaacaacactgccctgtgcaaggtgcttgccgtgcacattcacttagatgtgcag
cctgccaagaggacagattaccagctgtacgccagcggtggctcctcccgcactgagagc
agcagcctggagcctccagaggtgcccagccctattctgcagaacgaggctgccctggaa
gtcttgcaggagagtatcaagcgggtcaaggatggacctccctccctcaccaccatctgc
ttctatgccttctataacacggaacagctgctgaatactgcagagatctcctccgatagc
aaactgctggctgctgggtttgacaactcctgcataaaactctggagcttgcgatccaaa
aagctgaaatcagagccccaccatgtggacacatcccggatccgtctagcttgtgacact
ctggaggaggaggagaatgaagaagataatacaggcacagagatgaagattctgcgggga
cactgtggcccagtgtacagcacacggttccttgcagacagctcagggctgctctcttgt
tctgaagatatgtccatcagatactgggacctggggagcttcaccaacactgtgctgtat
cagggacatgcctaccctgtgtgggacgtggacatcagccccttcagcctgtactttgcc
agtggatcccatgaccgtaccgccaggctgtggtcttttgatcggacgtacccgctgagg
atatatgcaggacacctggcagatgtggactgtgtcaaattccaccccaactcaaactac
ttagctacaggttccactgacaaaactgttcggctatggagtgcccagcaggggaactcg
gtgcggctctttacaggtcaccgaggccccgtgctctccctctccttttctcccaatggt
aagtacttggcatctgctggtgaggaccagcggttaaagttgtgggacttggcctctggg
acgctttttaaagaactgagaggccacacggacagcatcaccagtctggcctttagcccg
gacagcggtctgattgcttctgcctccatggacaactccgtgcgtgtctgggacatcaga
agcacgtgctgcaacacacctgctgacggctcttcaggtgagcttgtgggcgtgtacact
gggcagatgagcaacgtcctgagtgtacagttcatggcttgcaacctcctcctggtgact
ggaatcacacaagagaatcaagaacattaa

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