Mus caroli (Ryukyu mouse): 110300002
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Entry
110300002 CDS
T05910
Symbol
Ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110300002 (Ctcf)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110300002 (Ctcf)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110300002 (Ctcf)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110300002 (Ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
110300002
NCBI-ProteinID:
XP_021025684
Ensembl:
MGP_CAROLIEiJ_G0031488
UniProt:
A0A6P7R5K4
LinkDB
All DBs
Position
8:96757863..96806632
Genome browser
AA seq
736 aa
AA seq
DB search
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDSSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSEENAEPDLDDNEEEEEPAVEIEPEPEPQPQPPPPPQPVAPAPPPAKKR
RGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQAATTDA
PNGDLTPEMILSMMDR
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaggcggttgaagccattgtggaggagtctgaaactttcattaaaggaaaa
gaaagaaagacttaccagagacgccgggaagggggccaggaagaagatgcttgccacctg
ccccagaaccagacagatgggggtgaggtggtccaggatgtcaacagcagtgtacagatg
gtaatgatggaacagctggatcctacccttctccagatgaagactgaagtcatggagggt
acagtggctccggaaacagaggctgcagtggacgatacccagatcataaccttgcaggtt
gtaaatatggaggaacagcccattaacataggagagcttcagcttgtccaagtccctgtt
cctgtgacggtacctgttgctactacttcagtagaagaacttcagggggcttatgagaat
gaagtgtctaaagagggccttgcagaaagtgaaccgatgatatgtcacaccttacctttg
cctgaaggatttcaggtggtgaaagtgggggccaatggagaagtggagacactagagcag
ggggagcttcctcctcaggaagactctagctggcaaaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaacttcgttacacggaagagggcaaagac
gtggatgtgtctgtgtatgattttgaggaagaacagcaggaaggactgctgtctgaggtt
aatgcagagaaagtagttggtaatatgaagcctccgaagccaacaaaaattaaaaaaaaa
ggtgtaaagaaaacattccagtgtgagctttgcagttacacatgtccccggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgagaggccacacaaatgccatctgtgtggc
agagcattcagaacagtgaccctcctgaggaaccatctgaacacacacacaggtactcgt
cctcacaagtgcccagactgcgatatggcctttgtgaccagtggagaattggtgcggcat
cgtcgttataaacacactcatgagaaaccatttaagtgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgacacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaaggcatatgagaacc
cattcaggggaaaaaccttatgaatgttatatttgtcacgctcggtttacccagagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcattgtccc
cattgtgacactgtcatagcccgaaaaagtgatttgggtgtccacttgcgaaagcagcat
tcctatattgaacagggcaaaaaatgtcgctactgtgatgctgtgtttcatgaacgatat
gctctcatccagcatcaaaaatcacacaaaaatgagaagcgcttcaagtgtgaccagtgt
gactatgcttgtagacaggagcggcacatgatcatgcacaagcgcactcacacgggggag
aagccttatgcctgcagccactgcgacaagaccttccgccagaaacagctcctcgacatg
catttcaagcgctatcatgatcccaactttgtccctgctgcctttgtctgttccaagtgt
gggaaaacattcacccgccggaacacaatggcaagacatgcagataactgtgctggtcca
gatggcgtagagggggaaaatggaggggagacaaagaagagcaaacgaggaagaaaaaga
aagatgcgatctaaaaaagaagactcctctgatagtgaagaaaatgctgagccggatctc
gatgacaatgaggaggaggaggagcctgctgtagaaattgaacctgagccagagcctcag
ccccagcctccgcctccacctcagcctgtggccccggccccaccacctgccaagaagaga
agggggcgacctcctggaagaaccaaccagcccaaacagaaccagccaacagccatcatt
caggtcgaagatcagaatacaggtgcaattgagaacattatagttgaagtcaaaaaggag
ccagatgccgagcctgcggagggggaagaagaggaggctcaggcagccaccacagacgcc
cccaacggagacctcacgcctgagatgatcctcagcatgatggaccggtga
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integrated database retrieval system
