Mus caroli (Ryukyu mouse): 110300494
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Entry
110300494 CDS
T05910
Symbol
Pkd1l2
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcal04040
]
110300494 (Pkd1l2)
04091 Lectins [BR:
mcal04091
]
110300494 (Pkd1l2)
Ion channels [BR:
mcal04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
110300494 (Pkd1l2)
Lectins [BR:
mcal04091
]
C-Type lectins
Others
110300494 (Pkd1l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Lectin_C
Ion_trans
GPS
REJ
PKD
Abhydrolase_9_N
Motif
Other DBs
NCBI-GeneID:
110300494
NCBI-ProteinID:
XP_021026342
Ensembl:
MGP_CAROLIEiJ_G0031606
UniProt:
A0A6P5Q8K6
LinkDB
All DBs
Position
8:complement(108167004..108248615)
Genome browser
AA seq
2461 aa
AA seq
DB search
MTMAGLVFLGLALSSGATVAKSEGGSLCSRSQVFFRDACYEFVPLEHTFSGAQGWCEGHG
GHLAFIPDEDTQQFLQRHITQDREWWIGLTGGSGHNGTVGGSATWLDTSNVNYSNWQEGQ
ATPAPGTCGYIGSGPSSQWAALEDCTQTFAFVCEFGVDRSLACEGHNATMHCDSGEVILV
QDAFYGRQTPYLCTRGIWPPSDLEGECGWVSVKDEVAGQCQGLQACQVAADGTYFGDPCP
TRGSYLWVQYQCLEGLRLVVPNGSFIFDNVTISLMWLLSPYTGNLSCVLSMGDGYTFDPY
YPPSVSSNVTHQFSSPGEFTVFAECTTSEWHVTAQKQVILREKVETPRITGCAGLSGAGA
GLLCQAVFGEPLWVQVDLDGGGGATYAVLSDNRTLAEFTAWRGSQIYNLTLDRDIQELLG
PGRHHLKIQAVSNDSTASVPSGNFTVCFVELLSGLRASWASDLVELGRDLVVNVSVARGT
LEELTFEVAGLNVNFSQKEESVGQSSGNYHVVVPAEGTFLVTVHVRNAFSELSLDIGNIT
VTAPSSLQGPSGINAEAKSGHERDMKVVTEPELYVDPFTNVTLGWPDDDPGLNFHWSCGR
CWAQWNACVGRQLLHTDQRLLVLHTFCLPPLNSAVTLHLAILRGQELEKETEQCLYVSAP
LNLGPQISCEKNCRPVKVDQDVLLTVTVGDETPVAVFSWYLDDTAPEEAEPLPAACRLRG
FWPRSLTLLHGNSSVLLLNSSFLQSWGPVIPIRVTALTSHAYGEDTYVISMLPRPKVPAC
TIDPEEGSVLTSFTVSCSTPAALGPVEYCFCLHSGFCLHCGPEPALPAVYLPLGEEKDGF
VLPVVISVTNRAGDREQTQVAVKVGHGYTGVEDVTFQEMVSERIATALHHESGREQLLLF
AKAVSSELNSEDQSPGSGQLGMDIKRKVRELMLRSLSEVTTGLQNMQRVQALAEVLREVT
HRAEELTPVAQWEASHALQRAAEALLVASTKIRPEDQRRQEATRAMFEAVGNVLEASLSH
RSEEPMEANSSQAYIVAQLLRVIDHLQSALLLGTLPGGLPAILVTPSISVYTDRIQPRSW
QGSSVHTAAADSVTFTLPTATFLGPMEDSQEPVDIRMMSFSQNPFSSPSQFDVSGTVGGL
RLTSSSGHPIPVKNLSQNIEILLPRISAHIQPKMLSLATREALSVNVTSGDTALGIQLHW
GPGVPLTLSLGYGYHPNETSYDAQTHLPPVAATGDLPTWILHPEDLPFGEGVYYLRVVPE
ADLESSSGRNLTVGITTFLAHCVFWDETQETWDDSGCQVGPRTTLSQTHCLCNHLTFFGS
SFLVMPNAIDVHQTAELFATFEDNPVVVTTVGCLCLLYVLVVIWARRKDIQDQAKVKVVV
LEDNDPFAQYHYLVTVYTGHRRGAATSSKVTLTLYGSDGESEPHHLSDPDAAVFERGGVD
VFLLATLFPLGELQSLRLWHDNSGDRPSWYVSRVLVYDAAVDRKWYFLCNSWLSVDVGDC
VLDKVFPVATEQDRKQFSHLFFTKTSTGFQDGHIWYSVFCNATRSSFTRVQRVSCCFSML
LCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFRNTRP
RLPTGKDGRQKQGPLNLTPSAQPMEEGLLTPETGIQSLISSLFKALKVPPPASGWDSMNP
VDINYLLALIEDIICPESTEGPGFWEEAKGREDPITSTRGSMKPKENMWHPKPELAVHGL
WKDSVYRRCLYLQLEHVERELQLLGPQGFLHHHSHAQALRQLRVLKGHLWGQPGTPALAY
PSTPRVSKSPRGLPWWCVLVGWLLVATTSGVAAFFTMLYGLHYGRASSLRWLISMAVSFV
ESVFITQPLKVLGFAAFFALVLKREDDEETLPLFPGHLSSPDPWVLFRSRRHSMERAYQP
PPMAAIEKMKTTRLKEQKAFALIREILAYLAFLWMLLLVAYGQRDPNAYHFHRHLERSFS
QGFSPVLGFRGFFEWANTTLVKNLYGHHPGFVTDGNSKLVGSAHIRQVRVQKSSCAVAQQ
LQDSLDGCRGPYSLGVEDLVDYGEGWNASAHNNSNGFPQAWRYQSQSQRRGYPMWGKLTL
YGGGGYVVPLGTDHQSASRILQYLFDNSWLDALTRAVFVEFTVYNANVNLFCTVTLTLET
SGLGTFFSHVTLQSLRLYPFTDGWHPFVVAAELTYFLFLFYYMVVQGKLMRKQKWGYFCS
KWNLLELAIILASWSALVVFVKRTILADRDLQHYRKHSDEGISFSETAAADAALGYIIAF
LVLLSTVKLWHLLRLNPKMNMITSALRRAWGDISGFVAVILIMLLAYSFASNLVFGWKLR
SYKTLFDAAETMVSLQLGIFNYEEVLDYSPILGSLLIGSCIVFMTFVVLNLFISVILVAF
SEEQKSDQLSEEGEIADLLLMKILSFLGIRCKREETWSSSEQPELPPQALAPQPAQALSR
V
NT seq
7386 nt
NT seq
+upstream
nt +downstream
nt
atgaccatggcaggcttggtgttcctggggctcgcactgagcagtggagccactgtagct
aagtcagaagggggcagcctctgctcaaggagccaggtgttcttcagagacgcttgctat
gagtttgtgccactggaacacaccttctccggcgcccagggctggtgtgaagggcacgga
ggccatctggccttcattcccgatgaagacacccagcagttcctgcaaagacacattacc
caggacagagaatggtggattggactcacgggaggctcggggcacaatggcaccgtggga
ggctctgcgacctggctggacacctcaaatgtcaactacagcaactggcaggaaggacag
gccacacctgccccagggacctgcggctacatcgggagtggtccttcatctcagtgggct
gccctagaggactgcacacagacctttgccttcgtctgcgagtttggggttgaccgcagt
ctggcttgtgagggccacaacgccaccatgcactgtgactcgggagaagtcatactagtc
caggatgctttctacgggcgccagaccccctatttgtgcactcggggcatctggcctccc
tcagacctggagggagaatgtggctgggtcagcgtcaaggatgaggtggcaggccagtgt
caggggctgcaggcatgccaggttgcggcagatgggacctactttggagacccatgcccc
accaggggcagctacctgtgggtgcagtaccagtgtctggaaggcctgcggctggtggtg
cccaatgggagcttcatctttgacaatgtcaccatctccctgatgtggctcctttctccc
tacactggaaacctgtcctgtgtactcagcatgggagacggctatacttttgacccctac
taccctcccagtgtgtccagcaacgtgacccaccagttcagctctcctggggagttcaca
gtgtttgctgagtgtacgaccagtgagtggcacgtgaccgctcagaagcaagtgatcctt
cgcgagaaggtggagacgcctcggatcactgggtgcgctggcctgtctggagctggagcc
ggccttctctgtcaggctgtctttggggaacccctgtgggttcaggtggatctggatgga
ggaggcggggcgacttacgctgtgctttcggataacagaactctggctgagttcaccgcc
tggaggggctcacagatttacaatctgaccttggacagagacatccaggaactgctgggc
cctgggaggcatcacctaaaaatccaagctgtcagcaacgacagcaccgcctcagtcccc
tctggaaacttcactgtgtgctttgtggagctgctgtccgggctgcgggcctcctgggct
tctgacctcgtggagcttgggcgggacttggtggtcaatgtctcagtggctcgtggcacc
ctggaggagctgaccttcgaggtggcgggactcaacgtgaacttctcccagaaggaagag
agtgttgggcagtcatctgggaactaccatgtggtggttcctgctgaaggcaccttcctg
gtcaccgtgcatgtgcggaacgccttctcagaactgagcttggacatcgggaacatcacg
gtcacagccccttccagtctccaaggaccatctgggataaatgctgaagcaaagagcgga
cacgaacgggacatgaaggtagtcaccgagcctgaactgtacgtcgaccctttcacaaac
gtcacactgggctggccagatgatgacccgggcttgaacttccactggtcctgcggacgt
tgctgggctcagtggaatgcctgtgtggggaggcagctgctccacacagaccagaggttg
ctggtgctccataccttctgtctgccaccgctcaactctgctgtcaccctgcatttggcg
atcctaaggggccaagagctggagaaagagacagaacagtgcctctacgtgtctgctccc
ttgaaccttgggcctcaaatcagctgtgagaagaactgccggccagtgaaagtcgaccaa
gacgttctgctcaccgtcaccgtgggagatgagaccccggtggccgtgttcagctggtac
ttagatgacaccgcaccagaggaggctgagcccctcccagctgcctgcagactccgagga
ttttggccacggtcgttgaccctccttcatggcaactcctccgtgttattgctgaacagc
agcttcctgcagagctgggggcctgttattcccatccgggtcacagcactgaccagccac
gcctacggggaggacacgtacgtgatcagcatgctacctcgacctaaggtgcctgcctgc
acgattgacccggaggaaggttctgtgctgacgagctttactgtctcctgcagcactccc
gcagccctgggccctgtggagtactgcttctgcctgcactcaggtttctgcctccactgt
ggccccgaaccagccctccctgctgtgtacctaccactcggagaagaaaaggatggcttt
gtcctgccagtagtcatctctgtcaccaatcgggcaggggacagggagcagacccaagtg
gcagttaaggtgggacatggttacacgggtgttgaagatgtgacattccaggagatggtg
tcagagagaatcgccacagctctgcaccacgagagtggccgtgaacagcttctcctgttt
gccaaggctgtgtcctctgaactcaactcggaggaccagagcccaggctctgggcaactt
ggaatggacatcaagcgaaaggtcagagagcttatgctgcgatcactgtccgaggtcacc
accggcctgcagaacatgcagagggtccaggctttggctgaggtgctgagggaggtgact
caccgtgctgaggagctcacacctgtggcccagtgggaagccagccatgctctgcagcgt
gccgctgaagccctgttggtagccagtaccaagattcgtcctgaggatcagagacgccag
gaggccaccagggccatgtttgaggctgtggggaatgttctggaagcttccctcagccac
agatcagaagagcccatggaggctaacagcagccaggcttacattgtggcccagctgctt
cgggttatagaccatttgcagagtgcccttctgctggggacattgccaggaggccttcca
gccattctggtcaccccctccatctctgtatacacagacagaatacagccacggagttgg
caaggctcttcagtgcacactgctgccgctgactctgtgaccttcaccctgcctaccgcc
accttcctcggccctatggaggacagccaggagcctgtggacataaggatgatgagtttc
tcacagaaccccttctcctccccaagccaatttgatgtcagtgggactgttggtggactt
cgcctgaccagctccagtggccatcccatcccagtgaagaacctgtcacagaatattgag
atcctgctgccccggatttcagcacacatccagccgaagatgctgagcctggccacccgt
gaagctctgtcagtgaatgtgacgtcaggggacacagctttggggattcagcttcattgg
ggacctggagtcccactcacactcagcctgggctatggctaccatcccaatgagaccagc
tatgatgcccaaacacacctgcctcctgtggccgccacaggtgatcttcccacctggatc
ctgcacccagaggacctgcccttcggagaaggagtctactatttgagggtggtccccgag
gctgatctggagtctagctctggcaggaacctcacagttggcattaccaccttcctggca
cattgtgtcttctgggatgaaacccaggagacctgggacgactctgggtgccaggtgggc
ccgcgaaccaccctctcccagacacactgcctttgcaaccacctcaccttcttcggaagc
tccttcctggtgatgcccaacgccatcgacgtccaccagactgccgagctctttgctacc
tttgaggacaaccccgtggtggttaccacagtgggctgcctctgcctgctgtatgtgctg
gtggtgatctgggccaggaggaaggacatacaggatcaggccaaggtgaaagtcgtagtc
ctggaggataatgacccctttgcccagtatcactacctggtgacagtctacactggacac
cggcgaggggcagccacgtcttcgaaggtgactctcaccctgtatggctcggatggagag
agtgagccacatcacctgtcagaccccgacgctgcggtttttgagcgaggaggggttgat
gtcttcctgcttgccactctgttccccctgggagaactgcagagcctcaggctgtggcat
gacaactctggggaccggccgtcatggtatgtgagccgggtgctggtctatgacgctgcg
gtggaccggaagtggtatttcctctgcaactcgtggctgtccgtcgatgttggagactgt
gtcctggataaggtgtttcctgtggccacagagcaggacaggaagcagtttagccacctg
tttttcactaaaacctccacgggcttccaggacgggcacatctggtactcagtcttctgc
aatgccactcggagcagcttcacgcgcgtacagagggtgtcctgttgcttctcgatgctt
ctctgcaccatgctgaccagcatcatgttctggggtgtccctaaggacccagccgagcag
aagatggatctgggcaaaattgagttcacttggcaggaggtgatgattgggttggagagc
tctatccttatgttccccatcaacctcctgattgtccagatcttccggaacacccgacct
cgtctcccaacggggaaggatgggagacagaaacagggaccccttaacctgactccctca
gcgcagcccatggaggagggacttctgacacctgaaacaggtatacagagtctcatcagc
tcactgtttaaagccctgaaggtgccacccccagcctcaggctgggactctatgaacccg
gtggacattaactacctcctcgctttaatagaggacatcatctgtccggagagcacagag
ggaccgggtttctgggaggaagccaaagggagagaggaccctatcacctccacgcgtggg
tctatgaaaccgaaagagaacatgtggcatcccaagcccgagctggcggtgcatggcctt
tggaaggacagcgtctacaggcggtgtctctaccttcagctggagcacgtggagagggag
ctgcagctgctggggccccaaggcttcctgcatcatcacagccatgcgcaggccctcaga
cagctacgcgtcctgaagggtcacctctggggacagcctggtaccccggcactggcatat
cccagcacgcctcgggtcagcaagtcccctcgtggcctgccctggtggtgtgtcctagtc
ggctggctcctggtggcgaccaccagcggggtggcggccttcttcacgatgctgtacggc
ctgcactatggaagagccagctccctcaggtggctcatctccatggctgtgtcctttgtg
gagagtgtgttcatcacccagcccctgaaggtgctgggctttgctgctttctttgcgctg
gtcttgaagagagaagatgatgaagagaccttgcccttatttccaggacatctgtctagc
ccagatccctgggtcttgttccgatcacggaggcacagcatggagcgcgcttaccagcct
cctcccatggctgcaatcgagaagatgaaaaccactcgcctcaaggagcagaaagcattt
gctctcatcagagagatcctggcctacctggctttcctgtggatgctgctgctggtggcc
tatgggcaaagggaccccaatgcttaccacttccaccgacatctggaacgcagcttcagt
caaggcttttcgcctgtcctgggcttcagagggttcttcgaatgggccaacaccacacta
gtgaagaacctatatggtcatcacccaggctttgtcactgacgggaactctaagttggtt
ggcagtgcccacattcgccaagtaagggtccagaaaagctcttgcgctgttgcccagcaa
ttacaggattctctggatggatgccgtgggccatattccctgggtgttgaagacctggta
gactatggagaaggctggaatgcctctgcccacaataacagcaatggcttccctcaggcg
tggcggtaccagagccagagccaacgccgcggttatcccatgtggggcaaacttaccctg
tacgggggaggaggctatgtggtccccttggggactgatcaccaaagcgcctcaagaatt
ctccagtacctctttgacaacagctggctggatgccctgaccagagcagtgtttgtggag
ttcactgtctacaacgccaacgtcaatctgttctgcactgtcacactcacactggagact
agcggcctaggtaccttcttctcacacgtgaccctgcagagcctgcgcctgtaccccttc
acggatggctggcatcccttcgtggtggcggcagagctcacttactttctctttctcttc
tactacatggtggtgcagggcaagctcatgagaaagcagaagtggggttacttttgcagc
aagtggaatcttctggaactggccatcatcctggccagctggagtgccctcgtggtgttt
gtaaagagaactatcctggcagatcgcgacctccagcactaccggaagcacagtgacgag
gggatcagtttcagcgagacagcagcggccgatgctgctcttggttacatcatcgccttc
ctcgtcctgctgtccacagtgaagctttggcacctgctcaggttgaatcccaaaatgaac
atgattacatcagcactgcgccgtgcctggggtgacatctcaggctttgtcgccgtcatt
cttatcatgctcctggcgtattcctttgcgtcaaatttagtatttggttggaaactccgt
tcctacaaaaccctctttgatgcagcagaaacaatggtcagccttcagctggggatcttc
aactatgaagaggtcctggactacagcccaattcttggctccctcctcattgggtcctgc
atagtttttatgacatttgtggtactgaatctgtttatctctgtcattctggtggccttc
agcgaggagcaaaagtctgaccagttgtcggaggaaggagagattgcggacttgctcctg
atgaaaatcctcagctttctgggcatcagatgtaaaagagaggagacttggagcagcagt
gagcagccagagttgcccccccaggctctggctcctcagccagcacaagctttgtcccgg
gtttaa
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integrated database retrieval system
