KEGG   Mus caroli (Ryukyu mouse): 110300642
Entry
110300642         CDS       T05910                                 
Symbol
Sox1
Name
(RefSeq) transcription factor SOX-1
  KO
K09267  transcription factor SOX1/3/14/21 (SOX group B)
Organism
mcal  Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mcal03000]
    110300642 (Sox1)
Transcription factors [BR:mcal03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    110300642 (Sox1)
SSDB
Motif
Pfam: SOXp HMG_box HMG_box_2 HMG_WDHD1
Other DBs
NCBI-GeneID: 110300642
NCBI-ProteinID: XP_021026555
Ensembl: MGP_CAROLIEiJ_G0030824
UniProt: A0A6P5Q3G6
LinkDB
Position
8:8837118..8841145
AA seq 391 aa
MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGTKANQDRVKRPMNAFMV
WSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKY
RPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGG
YAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAXPHPHHPHAHP
HNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGIPYGAAAAAAAAAGGAHQNSAVAAA
AAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAA
AAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq 1176 nt   +upstreamnt  +downstreamnt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcgcccacg
aacctctcgggcccggccggggcgggcgggggcggtggtgggggcgggggcggcggcggc
ggcgggggcaccaaggccaaccaggatcgggtcaagcggcccatgaacgccttcatggtg
tggtcccgcggacagcggcgcaagatggcccaggaaaaccccaagatgcacaactcggag
atcagcaagcgcctgggggccgagtggaaggtcatgtccgaggccgagaagcggccgttc
atcgacgaggccaagagactgcgcgcgctgcacatgaaggagcacccggattacaagtac
cggccgcgccgcaagaccaagacgctgctcaagaaggacaagtactcgctggccggcggg
ctgctagcggccggcgcgggtggcggcggcgcggccgtggccatgggcgtgggcgtgggc
gtcggggcggcggcagtgggccagcgcctggagagcccgggcggcgcggcgggaggaggc
tacgcgcatgtcaacggctgggctaacggcgcctaccccggctcggtggccgcggcggct
gcggccgcggccatgatgcaggaggcacagctggcctacgggcagcacccaggcgcgggc
ggcgcgcacccgcacgcacacccggcgcanccgcacccgcaccatccgcacgcgcatcct
cacaacccgcagcccatgcaccgctacgacatgggcgcgctgcagtacagccccatctcc
aactctcagggctacatgagcgcgtcgccttcgggctacggcggcatcccttacggcgcc
gcggccgccgccgccgccgctgcgggcggcgcgcaccagaactcggcggtggcggcggcg
gcagcggcggcagccgcgtcgtcgggtgccctgggcgccctcggttctctggtcaagtcg
gagccgagcggcagtccgccggccccggctcactcgcgggcgccgtgtcccggggacctg
cgcgagatgatcagcatgtacctgccggccggcgagggtggcgacccggcggcggcagcg
gctgcggcggcccaaagccggctgcactcgctgccacagcactaccagggcgcgggcgcg
ggcgtcaacggcacggtgcccctgacgcacatctag

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