Mus caroli (Ryukyu mouse): 110300642
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Entry
110300642 CDS
T05910
Symbol
Sox1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110300642 (Sox1)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110300642 (Sox1)
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110300642
NCBI-ProteinID:
XP_021026555
Ensembl:
MGP_CAROLIEiJ_G0030824
UniProt:
A0A6P5Q3G6
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All DBs
Position
8:8837118..8841145
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AA seq
391 aa
AA seq
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MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGTKANQDRVKRPMNAFMV
WSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKY
RPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGG
YAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAXPHPHHPHAHP
HNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGIPYGAAAAAAAAAGGAHQNSAVAAA
AAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAA
AAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcgcccacg
aacctctcgggcccggccggggcgggcgggggcggtggtgggggcgggggcggcggcggc
ggcgggggcaccaaggccaaccaggatcgggtcaagcggcccatgaacgccttcatggtg
tggtcccgcggacagcggcgcaagatggcccaggaaaaccccaagatgcacaactcggag
atcagcaagcgcctgggggccgagtggaaggtcatgtccgaggccgagaagcggccgttc
atcgacgaggccaagagactgcgcgcgctgcacatgaaggagcacccggattacaagtac
cggccgcgccgcaagaccaagacgctgctcaagaaggacaagtactcgctggccggcggg
ctgctagcggccggcgcgggtggcggcggcgcggccgtggccatgggcgtgggcgtgggc
gtcggggcggcggcagtgggccagcgcctggagagcccgggcggcgcggcgggaggaggc
tacgcgcatgtcaacggctgggctaacggcgcctaccccggctcggtggccgcggcggct
gcggccgcggccatgatgcaggaggcacagctggcctacgggcagcacccaggcgcgggc
ggcgcgcacccgcacgcacacccggcgcanccgcacccgcaccatccgcacgcgcatcct
cacaacccgcagcccatgcaccgctacgacatgggcgcgctgcagtacagccccatctcc
aactctcagggctacatgagcgcgtcgccttcgggctacggcggcatcccttacggcgcc
gcggccgccgccgccgccgctgcgggcggcgcgcaccagaactcggcggtggcggcggcg
gcagcggcggcagccgcgtcgtcgggtgccctgggcgccctcggttctctggtcaagtcg
gagccgagcggcagtccgccggccccggctcactcgcgggcgccgtgtcccggggacctg
cgcgagatgatcagcatgtacctgccggccggcgagggtggcgacccggcggcggcagcg
gctgcggcggcccaaagccggctgcactcgctgccacagcactaccagggcgcgggcgcg
ggcgtcaacggcacggtgcccctgacgcacatctag
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