Mus caroli (Ryukyu mouse): 110301031 Help Entry 110301031         CDS       T05910                                  Symbol Smarcc1 Name (RefSeq) SWI/SNF complex subunit SMARCC1   KO K11649   SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal03082   ATP-dependent chromatin remodeling mcal04714   Thermogenesis mcal05225   Hepatocellular carcinoma Brite KEGG Orthology (KO) [BR:mcal00001]  09120 Genetic Information Processing   09126 Chromosome    03082 ATP-dependent chromatin remodeling     110301031 (Smarcc1)  09150 Organismal Systems   09159 Environmental adaptation    04714 Thermogenesis     110301031 (Smarcc1)  09160 Human Diseases   09162 Cancer: specific types    05225 Hepatocellular carcinoma     110301031 (Smarcc1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:mcal03021]     110301031 (Smarcc1)    03036 Chromosome and associated proteins [BR:mcal03036]     110301031 (Smarcc1) Transcription machinery [BR:mcal03021]  Eukaryotic type   RNA polymerase II system    Coactivators     BAF/PBAF complex      110301031 (Smarcc1) Chromosome and associated proteins [BR:mcal03036]  Eukaryotic type   Chromatin remodeling factors    BAF complex     110301031 (Smarcc1)    PBAF complex     110301031 (Smarcc1)    GBAF(ncBAF) complex     110301031 (Smarcc1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 HEAT_GCN1 DUF919 BRCT_2 SpeFL Motif Other DBs NCBI-GeneID:  110301031 NCBI-ProteinID:  XP_021026909 Ensembl:  MGP_CAROLIEiJ_G0032726 UniProt:  A0A6P5QGF6 LinkDB All DBs Position 9:105412841..105522878 Genome browser AA seq 1104 aa AA seqDB search MAATAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK HYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA NKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRRDKQVLVHWGFYPDSYD TWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS TKNEEPVRSPERRDRKASANARKRKPSPSPPPPTATESRKKSGKKGQASLYGKRRSQKEE DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK EDEDPSKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM ETDADGQQPEKAENKVENESDEGDKIQDRENEKNSEKEQDSDVSEDVKPEEKENEENKEL TDTCKERESDAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ QQHGQTPQQAHQHTGGPAMAPLGATGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP GSMMPGQPMPGRMIPAVAANIHSTGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQ QQPPPPADGVPPPPAPGPPASATP NT seq 3315 nt NT seq  +upstreamnt  +downstreamnt atggccgcgacagcgggtggcggtccgggagcagcagcaggcgctgtgggtgcaggaggt gcggcggcggcctccgggctggccgtgtaccggaggaaggacgggggcccggccagcaag ttttgggagagcccggacacggtgtcccagctagattcggtgcgagtctggctgggcaag cactacaagaagtacgttcatgcagatgctcctaccaataaaacactagctggactggtg gtgcagcttctacagttccaagaagatgcctttgggaagcatgtcaccaacccagctttc accaaactacctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcacatt cttggggcagcttacaagtacaaaaatgaacagggctggcggagatttgatcttcagaac ccatcccgaatggatcgtaatgttgaaatgttcatgaacattgagaaaacattggtacag aacaactgtctgactagaccaaacatctacctcattccagacattgatttgaagttggct aacaagttgaaagatatcatcaaacggcatcaggggacatttactgatgagaagtcaaaa gcttcccaccatatttatccatatccttcctcacaagaggatgaggagtggctgaggcca gtgatgaggagagacaagcaggtgctggtgcactggggtttctacccagacagctatgac acttgggtccacagtaatgatgttgatgctgaaattgaagatgcaccaatcccagaaaag ccctggaaggttcacgtaaaatggattttggacaccgacgttttcaatgaatggatgaat gaagaggattacgaagtggatgagaacagaaagccagtgagctttcgtcaacgaatttca acaaagaatgaagagccagtcagaagtccagaaaggagagacagaaaagcctctgccaac gctcggaagaggaaaccttccccttctcctcctcctcccacagccacagagtcccgcaag aagagcgggaagaaaggacaagctagcctttatgggaaacgtagaagtcagaaggaagaa gatgaacaagaagatcttaccaaggacatggaagaccccacacctgtacctaacatagag gaagtggttctccctaagaatgtaaacccaaagaaggacagtgaaaacacacctgttaaa ggaggcacggtggcagatctagatgagcaggatgaagaagcagttacaacaggaggaaag gaagatgaagatcccagcaaaggtgatccaagtcgctcagttgacccgggtgaagacaac gtgacagaacagaccaatcacatcattattcccagctatgcatcctggtttgattataat tgtattcacgtcattgaacggcgcgcacttcctgagttctttaatggaaagaacaaatcc aagacccctgaaatatacttggcatatcgaaattttatgattgacacataccgtctaaac cctcaagaatatttaaccagtactgcttgccgacgaaacctgactggagatgtgtgtgct gtgatgagggttcatgccttcttagagcagtggggtcttgttaactaccaagttgaccca gagagtcgacccatggcaatggggcctcctcccacccctcacttcaatgtgttagctgac acaccctctgggcttgtgccgctgcatcttcgatcacctcaggtccctgctgctcaacag atgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggtctt cgaactgacatttactccaagaaaacactggcaaagagtaaaggtgctagtgcgggaagg gagtggacagaacaggagacccttcttctcctcgaggctctggagatgtacaaggatgat tggaataaagtctcagaacatgttggaagtcgtactcaggacgaatgcatcctccacttt ttgaggcttcccattgaggacccataccttgaaaattcagatgcttctcttgggccacta gcttaccagcctgtccctttcagccagtcgggaaacccagtgatgagtactgttgccttt ttagcatctgttgttgaccctcgtgtagcatctgctgcagcaaaagcagctttggaggag ttttctcgtgtccgagaagaagtgcccctggaattggttgaagcacatgtcaagaaagta caggaagccgcaagagcctctgggaaggtggaccccacctatggcttggagagcagctgt attgctggcacagggcctgacgagccagagaagcttgaaggatctgaagaagagaagatg gaaacagatgctgatggtcagcagcctgaaaaggcagaaaacaaagtggaaaatgaatcg gatgaaggtgataaaatacaagatcgagagaatgaaaaaaacagtgagaaggaacaagat agtgacgtcagtgaggatgtcaagccagaagaaaaggagaatgaagagaacaaagagctc actgatacatgtaaagaaagagaaagcgatgctgggaagaagaaagtggaacacgagatt tcggaaggaaacgttgccacagccgcagcagctgctctggcctcagctgctactaaagcc aagcacctggcggctgttgaagagagaaagatcaagtccctggtagctctcttggttgaa acacagatgaagaaactagagatcaaacttcgacattttgaagagctggagactattatg gacagagagaaagaggctctagaacaacagagacagcagttgcttactgagcgtcagaac ttccacatggaacagttgaaatatgctgaactacgagcccggcagcagatggagcagcag cagcagcacggccagacacctcagcaggcgcaccagcacacaggagggccggccatggcc ccacttggagccacaggccaccctggcatgatgccgcatcagcagccccctccctacccc ctgatgcaccatcagatgccgccaccccatcctccccaaccaggtcaaataccaggccct ggctccatgatgcctgggcagcccatgccaggtcgcatgatccctgctgtggcagccaac attcactctactgggagtggccctacccctcctggtatgcctccaatgcccggaaacatc ttaggaccccgggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcag cagcagccgcctcctcctgcagatggggtccctccacctcctgctccaggcccacccgcc tcggccactccctag

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