Mus caroli (Ryukyu mouse): 110301564
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Entry
110301564 CDS
T05910
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1 isoform X4
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110301564 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110301564 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110301564 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110301564 (Smarca4)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110301564 (Smarca4)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110301564 (Smarca4)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
110301564 (Smarca4)
Chromatin remodeling factors
BAF complex
110301564 (Smarca4)
PBAF complex
110301564 (Smarca4)
GBAF(ncBAF) complex
110301564 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Htt_C-HEAT
DUF2009
Motif
Other DBs
NCBI-GeneID:
110301564
NCBI-ProteinID:
XP_021027729
Ensembl:
MGP_CAROLIEiJ_G0031879
UniProt:
A0A6P5Q5T1
LinkDB
All DBs
Position
9:17624689..17716169
Genome browser
AA seq
1617 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMAPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEE
DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAE
VERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEEIEEEVRQKKSS
RKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVI
KYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVM
LLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESES
RSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccagacccacccttgggtgggactcctcggcctggtccttccccaggccct
ggtccttcacctggtgcaatgctgggtccaagccctggcccctcaccaggttctgcccac
agcatgatggggccaagcccaggacctccttcagcaggacatcccatgcccacccagggg
cctggagggtacccccaggacaacatgcatcagatgcacaagcctatggagtccatgcac
gagaagggcatgcctgatgacccacgatacaaccagatgaaagggatgggcatgcggtcg
ggggcccacacaggcatggcacctccacctagtccaatggaccagcattctcaaggttac
ccctcacccctcggcggctctgaacatgcttccagtcctgtcccagccagtggcccatct
tcaggcccccagatgtcctctgggccaggaggggccccactagatggttctgatccccag
gccttgggacagcaaaacagaggcccaaccccatttaaccagaaccagctgcatcaactc
agagctcagataatggcctacaagatgttggccaggggccagccattgcccgaccacctg
cagatggccgtgcaaggcaagcggccgatgcctggaatgcagcagcagatgccaacacta
cctccaccctcagtgtccgccacaggacccggacccggccctggccctggccctggccct
ggcccaggaccagcccctccaaattacagtagaccccatggtatgggagggcccaacatg
cctcccccaggaccctcaggtgtgccccccgggatgcctggtcagccgcctggagggcct
cccaaaccatggcctgaaggacccatggccaatgctgctgcccccacaagcaccccacag
aagctgattcccccgcaaccaacaggccgcccttcacctgcacctcctgctgtcccgcct
gctgcctcacctgtaatgccaccacaaacacagtccccagggcagccagcccagcctgct
ccattggtgccactgcaccagaagcagagccgaatcacccccatccagaagccccgaggc
ctcgaccctgtggagatcctacaggagcgggagtacaggcttcaggctcgaatcgcacac
agaattcaggaacttgaaaatctccctgggtccctggctggggaccttcgaaccaaagca
accatcgaactcaaggcccttaggttgctgaacttccagaggcagctgcgccaggaggtg
gtggtgtgcatgcgaagagacacggccctagagacagccctcaatgccaaggcctacaag
cgcagcaaacgtcagtcactgcgggaggcccgcatcactgagaagctggagaagcagcag
aagattgaacaggagcgcaagcgccgccagaagcaccaggagtacctcaacagcattctg
cagcatgccaaggacttcagggagtatcacagatcagtcacaggcaaactccagaaactc
accaaggctgtggccacctaccatgccaacactgagcgggagcagaagaaagaaaatgag
cgcattgagaaggagcgaatgcggaggcttatggctgaagatgaggagggctaccgcaaa
ctcattgaccagaagaaggacaagcgcctggcctacctcttgcagcagacagatgagtat
gtggccaacctcacagagctggtgcggcagcacaaagctgcccaggttgccaaggagaag
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaaggacagacacctgccattgga
ccagatggtgagcctctggatgagaccagccagatgagtgacctccctgtgaaggtgatc
catgtggagagtggcaagatcctcactggcaccgacgccccgaaagccgggcagctggag
gcctggcttgagatgaacccagggtatgaagtagcccccaggtcagacagtgaagaaagt
ggctctgaagaggaggaggaggaggaggaagaggagcagcctcagcccgcacagccccct
acactgcctgtggaagaaaagaagaagattccagacccagacagcgatgatgtctctgag
gtggacgcccgacacattattgagaacgccaagcaagatgtggacgatgagtacggtgtg
tcccaggcccttgctcgtggcctgcagtcctactatgctgtggcccatgcagtcacagag
agagtagataagcagtccgccctcatggtcaacggtgtcctcaaacagtaccagatcaaa
ggtttggagtggctggtgtccctgtacaacaacaacctgaatggcatcctggctgatgag
atggggctggggaagaccatccagaccattgcgctcatcacatacctcatggagcacaag
cgcatcaacgggcccttcctcatcatcgtgcctctctcgacactgtcaaactgggcgtat
gaatttgacaagtgggccccctctgtggtgaaggtttcctacaagggctctccagctgca
aggcgagctttcgtcccgcagcttcgcagtgggaagttcaacgtcttactgaccacctat
gaatatatcatcaaagacaagcatatcctagccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaaaaaccaccactgcaagttgacacaggtccttaacacacac
tatgtggcccctcggcgcctgcttcttacaggcacaccactgcagaacaagctacctgag
ctctgggccctgcttaacttcctgctccccacgatcttcaagagttgcagcacctttgaa
cagtggttcaatgcaccctttgccatgactggagagaaggtggacctgaatgaagaggag
actatcctcattattcgtcgcctacacaaagttctgcggcccttcctgctgcggcggctc
aagaaggaagttgaagcccagctccctgagaaggtagagtatgtcatcaaatgcgacatg
tcagccctgcagcgtgtgctgtaccgtcacatgcaggccaaaggtgtgctgttgactgac
ggctccgagaaggacaagaagggcaaaggtggcaccaagacactgatgaacactattatg
cagctgcgcaagatctgcaaccacccctacatgttccagcacatcgaggagtccttttct
gagcacttggggttcaccggcggcatcgtgcaaggattggacctctaccgtgcctcaggg
aaatttgaacttcttgatagaattctacccaaactccgtgcaacgaaccataaagtgctc
ctcttctgccaaatgacctccctcatgaccatcatggaagactactttgcataccgtggc
ttcaaatacctcaggcttgatggaaccacaaaagcagaagaccggggcatgctgttgaaa
acctttaatgaacctggctctgagtatttcattttcctgctcagtacccgtgctgggggg
ctgggcctgaacctgcagtcagctgacactgtgatcatctttgacagtgactggaatccc
caccaggacctgcaagcacaggatcgagcccatcgcattggacagcagaatgaggtgcgt
gttcttcgcctgtgcacggtcaacagtgtggaagagaagatactggctgctgccaaatac
aaactcaatgtggatcagaaggtgatccaggcaggcatgttcgaccagaagtcgtccagc
catgagaggcgtgccttcctgcaggccatcctggagcacgaggagcaggatgaggaggaa
gatgaggtgcctgatgatgagaccgtcaaccagatgattgcccggcacgaagaagagttt
gacctcttcatgcgcatggacttggaccgccggcgtgaagaagcccgcaaccccaagcgg
aagccacgcctcatggaagaggatgagctcccatcctggatcatcaaggatgatgcagag
gtggagcggctgacatgtgaagaggaagaggagaagatgttcggccgtggttctcgccac
cgcaaggaggtagactacagcgactcactgacagagaagcaatggctcaagaccctgaag
gctatcgaggagggcacgctggaggagatcgaagaggaggtccggcagaagaaatcttca
cgtaagcgtaagcgagacagcgaggccggctcctccaccccgaccaccagcacccgcagc
cgtgacaaggatgaggagagcaagaagcagaagaaacgtgggcggccacctgctgagaag
ctgtccccaaacccacctaacctcaccaagaagatgaagaagatcgtggacgctgtgatc
aagtacaaagacagcagcagtggacggcagctcagcgaggtgttcatccagctcccctct
cgcaaggagcttcctgagtactatgagctcatccggaagcctgtggacttcaagaagatc
aaggaacgcatccgaaaccacaagtaccgcagcctcaacgacctggagaaggatgtgatg
ctgctgtgccagaacgctcagacgttcaacctggagggttccctgatctatgaggactcc
atcgtcctgcagtctgtcttcaccagcgtacggcagaagattgagaaggaggacgacagt
gaaggcgaggaaagcgaggaggaggaggagggcgaggaggaaggctccgagtctgagtcc
cgctccgtcaaggtgaagatcaagctgggccgcaaggagaaggcccaggaccgactcaag
gggggccgccggcggccaagccggggatcccgggccaagccggttgtgagtgacgatgac
agtgaggaggagcaggaggaggaccgctcaggaagtggcagtgaggaagactga
DBGET
integrated database retrieval system
