Mus caroli (Ryukyu mouse): 110301934
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Entry
110301934 CDS
T05910
Name
(RefSeq) collagen alpha-4(VI) chain
KO
K06238
collagen type VI alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04151
PI3K-Akt signaling pathway
mcal04510
Focal adhesion
mcal04512
ECM-receptor interaction
mcal04820
Cytoskeleton in muscle cells
mcal04974
Protein digestion and absorption
mcal05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110301934
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110301934
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110301934
09142 Cell motility
04820 Cytoskeleton in muscle cells
110301934
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110301934
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
110301934
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110301934
00536 Glycosaminoglycan binding proteins [BR:
mcal00536
]
110301934
Exosome [BR:
mcal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110301934
Glycosaminoglycan binding proteins [BR:
mcal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110301934
Hyaluronan
Extracellular matrix or blood plasma proteins
110301934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
VWA_CoxE
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
110301934
NCBI-ProteinID:
XP_021028313
Ensembl:
MGP_CAROLIEiJ_G0032610
UniProt:
A0A6P5Q742
LinkDB
All DBs
Position
9:complement(101379605..101488001)
Genome browser
AA seq
2309 aa
AA seq
DB search
MGSWKTFWLIISLAAGLGFVKSQRIVCREASVGDIVFLVHNSINPQHAHSVRNFLSILAN
SLLVGRDNIRVGLAQYGDTPTSEFLLSTYHRKGDVLKHIRGLQFKPGGNRMGQALQFILE
HHFWEGAGSRASQGVPQVAMVVSSGLAEDHIREPAEALRRAGILVYAIGVKDASQAELRE
TASSPKDNFTFFVPNFPGLPGLAQKLRPELCSTLAKAAQYTEQESPACTEASPADIVFLV
DSSTSIGLQNFQKVKHFLHSVVSGLDVKSDQVQVGLVQYSDNIYPAFPLKQSSLKSAVLE
RIRNLPYSMGGTSTGSALEFIRANSLTEMSGSRAKDGVPQIVVLVTDGESSDEVQDVADQ
LKRDGVFVFVVGINIQDVRELQKIASEPFEEFLFTTENFSILQALSGTLLQALCSTAERQ
MKKSTKTYADVVFLIDTSQGTSQASFQWMQNFISRIIGILEVGQDKYRIGLAQYSDQGHT
EFLFNTHKTGNEMVAHIHELLVFQGGSRKTGQGLRFLHRTFFQEAAGSRLLQGVPQYAVV
ITSGKSEDEVREVAQILRKRGVNIVSVGLQDFDRAELEGIGPVVLVSDLQGEDGIRQLML
DVNMFIQGSPKPPRVMTDVAKDAVEECLAPVPADLVFLVEDFSSAGQPNFHRVVHFLTTT
VHSLNIHPDTTRVSLVFYNEKPRLEFSLDTYQTAAQVLHHLDRLTFRARRGRTKAGAALD
FLRREVFLPEKGSRPHRGVQQIAVVIMESPSLDNVSTHASYLRRAGVTIYAAGTQPASES
KDLEKIVTYPSWKHAIRLESFLQLSVVGNKLKKKLCPEMLSGMPPLMSFIPESTRQSTQE
GCESVEKADIYFLIDGSGSIKPNDFIEMKDFMKEVIKMFHIGPDRVRFGVVQYSDKIISQ
FFLTQYASMAGLNAAIDNIQQEGGGTTTGKALSKMVSVFQNTARIDVARYLIVITDGQST
DPVAEAAQGLRDIGVNIYAIGVRDANTTELEEIASKKMFFIYEFDSLKSIHQEVIQDICS
SENCKNQKADIIFLIDGSESITPKDFEKMKDFMERMVNLSNIGADETQIGLLQFSSTPRE
EFRLNRYSSKADMCRAILSVQQMSDGTHTGKALNFTLPFFDSSRGGRPRVHQYLIVITDG
VSQDNVAPPAKALRDRNIIIFAIGVGNVQRAQLLEITNDQDKVYQEENFESLQSLEKEIL
SEVCSSQGCNIDLSVGVDTSTSSERAQQELRRLLPELMQQLAFLSNISCEAPGQMEPRFR
YVVPGSSDLPVFDSGFETYSDETIQKFLVHQSSVNNRMDVDFLQSLGETAIHLSLAKVKV
LLVFTDGLDEDLERLRRTSEFLRSRGLSGLLLVGLGGAHKLEELQELEFGRGFAYRQPLS
SSLPSLPSVLLKQLDTIVERTCCNMYAKCYGDDGVRGEPGSRGEEGERGLDGLPGHPGEE
GDHGQRGPRGLPGLRGEEGCPGVRGPKGARGFSGEKGNPGEEGVGGLDGEQGDRGAAGPS
GEKGSSGSRGLTGLPGPAGPRGEPGLRGDPGDPGIDNLIQGPKGEKGRRGHQGSPGFHGP
LGEAGSVGPRGSLGRHGLPGLKGVLGETGELGSRGEPGHPGPQGPRGRQGPPGFFGQKGD
PGTQGNPGPPGPSGSKGPDGPRGLKGELGPAGERGPRGQQGPRGQPGLFGPDGHGYPGRK
GRKGEPGFPGYPGVQGEDGNPGRGGEKGAKGIRGKRGNSGFPGLAGTPGDQGPPGKMGTK
GSRGLADRTPCEIVDFVRGNCPCSTGISRCPAFPTEVVFALDMSNDVSPSDFERMRNILL
SLLMKLEMSESNCPTGARVAIVSYNTRTDYLVRLSDHRGKAALLQAVRKIPLERSSGSRN
LGATMRFVARHVLKRVRSGLLVRKVAVFFQAGRNYDTTSVSTATLELHAADIATAVVTFT
EEHNLPEAGLVDGPNEFHLFTWETEGQEDMERLASCTLCYDKCRPALGCQLHAPGPQELD
IDLVFLVDSSQGVSRDIYLGALRLVDSVLKDLEVAAHPGTSWHGARAALLTHTTPGFWPG
VDQAPVLEYFHLTSHGHRTQMQRQIQEAASGLLQGGPALGHALEWTLENVLLTAVLPRRL
RVLYAIVASETSTWDREKLRALSQEAKCKGIALFVLAVGPGVGAQELAELTRVASAPWEQ
HLLRLEGVSEAEVAYASRFTEAFLNLLNSGINQYPPPELVKECGGPNRGDTLLHFFTSAK
RLSRSQSGTSAAFANDSEALKSQGIFLGERKSRVASVALQEALGSHGKDRVDPEDIDRQT
PAKGRHLGPTHGPCPMDPEEGECLNYVLK
NT seq
6930 nt
NT seq
+upstream
nt +downstream
nt
atgggatcttggaagacattttggttgatcatctcccttgcagctggtttgggcttcgtc
aagtcacagaggattgtctgcagggaggcgtctgtgggagacattgtgtttctggtccac
aacagcatcaacccccagcatgcccacagtgtgcggaacttcttgtccatattggcaaac
agtttgctagttggcagagacaacatccgtgtgggtctggcccagtatggcgatacaccc
acttccgagttcctgctttcgacttatcaccgcaaaggcgatgtgttgaaacatatccgt
ggacttcagtttaagcctggaggcaacaggatgggccaggccctgcagttcatcttagag
catcacttctgggaaggagccgggagccgggcaagccaaggggtgcctcaggtggccatg
gtggtgagcagcggtctagcagaggaccacattcgcgaacctgctgaagctctcaggaga
gcgggaatcttggtatacgctatcggggtcaaagacgcatctcaggctgaactccgggag
actgcgagtagtcccaaggataacttcaccttttttgttcccaacttccctggcttgcct
ggcctcgcccagaagctgcggccagagctctgcagtactctagcgaaggcagctcaatat
actgagcaggagtctccagcatgcacagaagcatccccagctgacattgtgtttttggtg
gacagttcaactagcatcggactccagaacttccagaaagtgaagcatttccttcactct
gttgtctcggggctcgacgtcaaaagtgatcaggtgcaagtggggctggtccagtacagt
gacaacatctacccagcctttccgctgaagcaatcctctctgaagagcgctgtcctggaa
cggatccggaatttgccctacagcatggggggcacaagtaccggaagcgccctggagttc
atcagggccaactccttgactgagatgagtggcagccgtgccaaggatggggttcctcag
atagttgtcctggtgacagatggggagtccagtgatgaggtccaggatgtggctgaccag
ctgaaaagagacggggtctttgtgtttgtggtagggatcaatattcaagatgtccgagag
ttgcagaaaatagccagcgagccgtttgaggagtttctcttcaccacagaaaacttcagc
atcttgcaggcgctctcaggaaccctccttcaggccctgtgttccacagcagagaggcag
atgaaaaagtctaccaagacctacgcggacgtggtctttcttattgacacctcccagggg
acatcacaggctagtttccagtggatgcagaatttcatctctagaattattggcatcctg
gaggtcggccaggacaaataccggattgggctggctcagtatagcgatcaaggtcacact
gagtttttgttcaatacccacaagaccgggaatgagatggtcgcacacatccatgaactc
ttggtgttccaaggtggctccaggaagaccggccaaggccttcggtttcttcatcggact
ttcttccaggaggcagcaggaagccggctcttacagggtgtccctcagtatgcggtagtc
attacttcagggaaatctgaggacgaggtcagagaggtcgcacagatcctgaggaagaga
ggcgtgaacatcgtgtctgtgggcttgcaggactttgacagggcagaactggaggggata
gggcctgtagtgcttgtgtctgacctgcagggagaagatggaatcagacagctaatgctg
gatgtgaatatgttcatccaggggagtccgaagcctccacgggtcatgactgatgttgca
aaggatgctgtagaagaatgtctagctcccgttccagccgacctggtgttccttgttgag
gactttagcagtgccgggcaacccaatttccatcgagttgtccatttcttgacgaccact
gtccactctctcaacatccaccctgataccacaagagtcagcttggtcttttacaatgag
aaaccacggctggagttttccctggatacgtatcaaactgctgcccaagtcttacaccat
ctggacaggttaactttccgagcaagaagaggaaggacgaaggcaggtgctgctttagac
ttcctgaggagagaagttttccttccagagaagggcagccggccccatcggggcgtacag
cagatagctgtggtcatcatggaaagtccttctctagacaatgtgtctacacatgcttcc
taccttcgcagggcgggcgtcaccatctatgcagcgggcacccagcctgcctctgagagt
aaggacctggagaagattgtcacatacccttcctggaagcatgccatccgcctagagtcc
tttctgcaactcagtgttgtaggaaacaaacttaaaaagaagctctgccctgagatgttg
agcggaatgcctcctctgatgagctttattccagaaagcacacgacaaagcacacaggaa
ggctgcgagagtgtggagaaggcagacatttacttccttattgatggatctggcagcatc
aaacccaacgacttcattgaaatgaaggacttcatgaaggaggtgataaagatgttccac
attgggcccgaccgagtacgatttggagtcgttcagtactcggacaaaattataagccag
tttttcctcacccagtatgccagcatggcaggactgaatgcagccattgataacatccaa
caggagggaggtggtaccaccactggcaaggccttaagcaaaatggtatcggtcttccaa
aacactgccagaattgacgttgcccgatacctcattgtcatcactgacggtcagtctact
gacccggtggccgaggccgcacagggattgagagacatcggagtcaatatttatgccatt
ggagtaagggatgctaatacgactgagcttgaggaaatagcgagcaaaaagatgtttttc
atatatgagtttgactccttgaagtccatccaccaggaagtcattcaggacatctgctcc
tcagagaactgtaagaaccagaaagctgacatcatcttcttgattgatggctcagaatcc
atcactcctaaagactttgaaaagatgaaggacttcatggagaggatggtgaacctgtct
aacatcggtgctgatgaaactcagattggccttctccagttcagctccactccccgggaa
gaattcaggctaaaccggtactcctcaaaggcggacatgtgcagagccatcttgagtgtc
caacagatgagcgatggtacccatactgggaaagccttgaatttcactctgccctttttt
gacagttcaagaggagggagacccagagttcatcagtatttgattgtgatcaccgacggg
gtctcccaggataatgtagctcccccagccaaagccctcagggacagaaacataattatt
tttgctatcggggtgggaaatgttcaaagagcccagcttttggagatcaccaatgaccag
gacaaagtataccaggaggaaaattttgagtccctgcagagcctggaaaaggaaattctt
tctgaggtctgtagttcccaaggctgcaacatagatctgtctgtaggagttgatacctca
acctcttcagagcgagctcagcaggagcttcgaaggttgctgccggagctgatgcaacag
ctggcttttctctctaacatcagctgtgaggctcctggccagatggagccgaggttccga
tatgtggttccaggctccagcgacctgcctgtctttgactccggctttgagacatacagc
gatgagaccatccagaagttcttggtgcatcagagttctgtgaacaaccgtatggatgta
gactttctgcaatccctgggagagactgccatccacctgtctcttgctaaagtgaaggtc
cttttagtgtttacagacggacttgatgaagacctagagaggctgaggagaacctcagag
ttccttcgcagtagagggctctccggactgctgctcgtcggcctgggaggtgcacataag
ttagaagagctgcaggagctggagtttggcagagggtttgcctacaggcagcctctgagc
tccagtctgccgtccctcccaagtgtcttactgaagcaacttgacacaattgtggagagg
acatgctgtaacatgtatgccaagtgttatggagacgatggcgtcagaggtgaacctggg
agtcgtggggaggagggagagaggggtttggacgggctccccggccatcctggtgaagag
ggagaccacggacaaagaggcccccgaggtcttcctggacttcgaggtgaggaaggatgt
ccaggtgtgagaggacctaagggagcaagaggattttcaggagagaagggcaaccctggt
gaggaaggtgttgggggcttggatggagaacagggcgatcgtggagccgcagggccgtct
ggagagaaaggaagcagcggcagtcggggcttgacaggtctgcctggaccagctggacct
cgtggggagcctgggctgaggggagatccgggggatcctggaattgataatctcatccaa
ggccccaagggggaaaagggaaggcgtggacatcagggaagccctggtttccatggacct
ctgggggaagctggcagtgtgggacctcgggggtcacttggaagacatggcttgccaggg
ttgaagggtgtgctcggagaaaccggtgagctaggttcccgaggagagcctgggcatcca
ggcccacagggacccagaggaaggcaaggaccaccaggattttttggtcaaaaaggggat
ccgggtacccaggggaatcctgggcctccagggccaagtggctcaaaaggaccagatgga
cccagaggactgaagggagaactcggtcctgcaggagaaagaggcccacggggtcagcaa
gggccaagagggcagcctggtcttttcggtccagacggccacggttatccgggaagaaaa
ggcaggaagggtgaacctggattccctggctatcctggtgtgcaaggagaagatggtaat
ccaggccgtggaggagagaagggggccaagggaatccgagggaagaggggcaattctgga
tttcctgggcttgctggaactccaggtgaccaaggcccaccaggaaaaatgggcaccaaa
ggctcaagaggcttggcagataggacgccttgtgaaattgttgacttcgtgcgaggaaac
tgcccttgctcaacaggtatttccaggtgcccagcattcccaacggaagtggtctttgcc
ttggacatgtccaacgacgtctccccatcagactttgagaggatgaggaacattttatta
tctctgttgatgaagctggaaatgagcgagagcaactgtcccactggtgcccgagtggcc
attgtttcctacaacacgaggacagattacctagtgcgcttgtcagaccatcggggaaaa
gctgcccttctgcaggctgtcaggaaaatccccctggaacgttcatctggatctcggaac
ctcggggccactatgaggtttgtggctagacacgtattgaaacgtgtacgctcaggcctt
ctggtgaggaaggtggccgtgttcttccaggcaggtaggaactatgacacaacctctgtc
agcacagccacgctggagctccacgcagcggacattgctacagcagttgtgaccttcaca
gaggagcacaacctcccagaggcagggctggtggatggacccaatgaatttcacttgttt
acgtgggagaccgagggccaggaggacatggaacgcctggccagctgtactctctgctat
gacaagtgccgaccagccctggggtgccagctgcatgctcccgggcctcaggaattggac
atagacttggtattcctggtggacagctcccagggtgtcagcagggacatataccttggg
gctttgcggctagtggattcagtgctcaaggatctggaggtggctgcgcatcctggcaca
tcctggcatggggcgcgcgcagccctgttgacacacacgaccccaggcttttggcctggt
gtggatcaagcccctgtgcttgagtacttccacttgacctcccatggccaccggacacaa
atgcaaaggcagattcaggaggctgcgagtggcctgctacagggaggccccgccctgggc
catgccctggagtggacgctggaaaacgtgcttctgacagccgtactgcctcggaggtta
cgggtcctctatgccatcgtggccagcgagacaagcacctgggacagagagaagctaagg
gctctgtctcaggaggccaagtgcaagggcatcgcactattcgtgctcgccgtgggccct
ggagtgggcgcccaggagctggctgagctgaccagagtggccagtgcgccctgggagcag
cacctgctacgcctagagggtgtctcagaggcagaggtggcctatgccagtagattcacg
gaggccttcctgaaccttctaaatagtggaataaaccagtatccacccccagagcttgtt
aaggagtgtggaggcccaaaccgtggggacaccttgctgcatttcttcacttctgccaag
aggttgtccaggagccagtctggcacgtctgctgcctttgcgaatgactcagaagcgctc
aagtcacagggcatctttctaggggagaggaaaagcagggtggcgtccgtagctctgcaa
gaagcgttgggaagtcatgggaaggacagggtggaccctgaagacattgatcggcaaacg
ccagcaaaaggaagacatttgggccccacccacggtccttgtcccatggatcctgaggaa
ggcgagtgcctgaattatgtcttgaagtag
DBGET
integrated database retrieval system
