Mus caroli (Ryukyu mouse): 110301979
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Entry
110301979 CDS
T05910
Symbol
Col6a5
Name
(RefSeq) collagen alpha-5(VI) chain
KO
K06238
collagen type VI alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04151
PI3K-Akt signaling pathway
mcal04510
Focal adhesion
mcal04512
ECM-receptor interaction
mcal04820
Cytoskeleton in muscle cells
mcal04974
Protein digestion and absorption
mcal05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110301979 (Col6a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110301979 (Col6a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110301979 (Col6a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110301979 (Col6a5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110301979 (Col6a5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
110301979 (Col6a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110301979 (Col6a5)
00536 Glycosaminoglycan binding proteins [BR:
mcal00536
]
110301979 (Col6a5)
Exosome [BR:
mcal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110301979 (Col6a5)
Glycosaminoglycan binding proteins [BR:
mcal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110301979 (Col6a5)
Hyaluronan
Extracellular matrix or blood plasma proteins
110301979 (Col6a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Copine
VWA_CoxE
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
110301979
NCBI-ProteinID:
XP_021028372
Ensembl:
MGP_CAROLIEiJ_G0032609
UniProt:
A0A6P5QDV8
LinkDB
All DBs
Position
9:complement(101243548..101349159)
Genome browser
AA seq
2640 aa
AA seq
DB search
MKLRLIAFVLILWTETLADQSPGPGPEYADVVFLVDSSDYLGIKSFPFVRTFLNKMISSL
PIEANKYRVALAQYSDALHNEFQLGTFKNRNPMLNHLKKNFGFIGGSLKIGNALQEAHRT
YFSAXXXXRXKXQXPPILVVLASAESEDDVEEASKALREDGVKIISVGVQKASEENLKAM
ATSQFHFNLRTARDLGVFAPNMTRIIKDVTQYREGTTVDLITAVVPTTPAAPTTPAAPTT
PAALTTAANHIDKTVPFPTSCQKDSLADLIFLVDESVGTTQNLRDLQNFLENVTSSVDVK
DNCMXLGLMSFSDRAQTISSLRSSANQSEFQQQIQKLSLQTGASNVGAAIEQMRKEGFSE
SSGSRKAQGVPQIAVLVTHRASDDVVREAALDLRLEGVTMFAMGIEGANNTQLEDIVSYP
SRQSISTHSSYSHLESYSGNFLKKIRNEIWNQVSTRAEQMELDKTGCVDTKEADIYFLID
GSSSIRKKEFEQIQIFMSSVIDMFPIGPNKVRVGVVQYSHKNEVEFPVSRYTDGIDLKKA
VFNIKQLRGLTFTGKALDFILPLIKKGKSERTDRVPCYLIVLTDGKSNDSVLEPANRLRA
EQITIHAIGIGEANKTQLRQIAGKDERVNFGQNFDSLKNIKNEIVHRICSEKGCEDMKAD
IMFLVDSSGSIGPTNFETMKTFMKNLVGKIQIGADRSQVGVVQFSDYNREEFQLNKYSTQ
EEIYAAIDRMSPINRNTLTGGALTFVNEYFDLSKGGRPQVRKFLILLTDGKAQDEVGGPA
MALRSKSVTIFSVGVYGANRAQLEEISGDGSLVFHVENFDHLKAIESKLIFRVCALHDCK
RIELLDIVFVLDHSGSIGPREQESMMNLTIHLVKKADIGRDRVQIGALTYSNHPEILFYL
NTYSSGSAIAEHLRRPRDTGGDTYTAKALQHSNILFTEEHGSRLKQNVRQLMIVITDGVS
HDRDKLDEAARELRDKGITIFAVGVGNANQDELETMAGKKENTIHVDNFDKLRDIYLPLQ
ETLCNNSQETCNLPEADVIFLCDGSDMVSDSEFVTMTTFLSDLIDNFDIESQRMKIGMAQ
YGSRYQEIIELESSLNKTQWKSQVHSVAQSKGLPRIDFALKHVSDMFDPSVGGRRNAGVP
QTLVVITSSSPRYDVTDAVKVLKDLGICVLALGIGDVYKEQLLPITGNSEKIITFQDFNK
LKNVDVKKRMVREICQSCGKANCFVDVVVGFDISTHRQGQPLFQGHPRLESYLPGILEDI
TSIRGVSCGAGAEAQVSLAFKVNSDQEFPAKFQIYQKAVFDSLLHVTVRGPTHLDAPFLQ
SLWDMFEERSASRGQVLLIFSDGLQGESITLLERQSDRLREAGLDALLVVSLNTFGHDEF
SSFEFGKGFDYRTQLTIGMLDLGKTLSQYLGNIAERACCCTFCKCPGIPGPHGTRGLQAS
KGSSGPKGSRGHRGEDGDPGRRGEIGLQGDRGVMGCPGTRGQKGVKGLSGAQGEHGEDGL
DGLDGEEGFYGFRGGKGQKGDLGDQGHPGIRGAPGEDGEKGFPGDPGDPGKDSDIKGQKG
EKGERGRQGITGQKGTHGRPSSKGSRGMEGRRGPQGPSGQAGDPGPQGTQGPEGLQGSQG
SSGNRGGKGDKGSQGYQGPQGSPGPAGPRGGIGRPGFVGRKGEPGVPGGPGPVGPPGQRG
KQGDYGIPGYGRTGRKGVKGPTGFPGDPGQKGDAGNPGIPGGPGPKGFKGLTLSQGLKGG
SGLQGSQGPPGRRGPKGTAGQPIYPPCELIQFLRNHSPCWKEKCPVYPTELVFALDQSSG
ITERRFNETRDTITSIVSDLNIRENNCPVGARVAVVSYDSDTSYLIRGSDYHSKKQLLQL
LSQIKYQVPRKARDIGNAMRFVARNVFKRTSAGTNTRRVAVFFSNGQAASRASVLTATME
LSALDISLAVFAYNERVFLDEAFGFDDTGTFQVIPVPPVGDYEPLEKLRRCTLCYDKCFP
NTCAEEPFFPENSYMDVAFLLDNSRNIASDDFQAVKALVSSVIDSFHITSNPSASESGDR
VALLSYSPSESSRRKGRVKTEFAFTTYDNQSIMKNYIYTSLQQLNGDATIGLALQWAMEG
LFLGTPNPRKHKVIIVISAGENHEEKEFVKTVALRAKCQGYVIFVISLGSTQRDEMEELA
SYPLDHHLIQLGRMYKPDLNYIVKFLKPFIYSVRRGFNQYPPPMLKDDCRLVELERGDTL
PHGLRLTAKLREVPASTNSLADQELNAGKDSSFVLEDHRGDHLVYVPSQMLEPHKLVSHY
GNGRESVAMASLTSEHESHGREELGLAHEPGDASLQEYYMDVAFLIDASQRVGGRNEFKE
VRTFLTSVLDYFHIAPAPLTSVLGDRVAVLTYSPPGYLPNTEECPVYLEFDLVTYNTVHQ
MKHHLQESLQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFIVTAGETNPLDKEVLRN
ASLRAKCQGYSIFVFSFGPIHNDMELEELASHPLDHHLVRLGRVHRPDLDYVIKFIKPFV
HSIRRAINKYPGRDLQAKCDNLTFPGPENAGTEDSALLIPEVYRIEAGESELSGDSGSQE
QHFFLLGNSHGNHSESAADLMQQLYLLLSSGELMVNDKEEPCSAETPAPVNSKQDGEDAR
NT seq
7923 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccggctaattgcgtttgtcctaatcctctggactgaaaccctggcagaccag
agcccagggccaggccccgagtacgcagatgtggtgtttctggtggacagctccgattac
ctgggaattaagtccttcccatttgtgagaacttttctcaacaagatgatcagcagcctc
cccatagaggccaacaagtaccgcgtggccctggcccagtacagcgatgctctccacaat
gagttccagctgggcactttcaagaacaggaaccccatgctgaaccacctgaagaagaac
ttcgggttcatcggtggctccctgaagatagggaacgccctgcaggaggctcacaggacc
tatttctctgctnccanaantgnaagaganaaganacagtncccnccaatcctggtggtg
ctggcttcagcagagtctgaggatgatgtggaagaggcttcgaaggccctgcgggaagat
ggggtgaaaatcatctctgtgggggtgcagaaggcttctgaggaaaacctgaaggcaatg
gccacctctcagttccatttcaatctcaggactgccagagacctcggcgtgtttgcccca
aacatgacacggatcatcaaggatgtgactcagtacagggaagggacaactgtggaccta
atcacagctgtagtcccaaccacacctgcagccccaaccacacctgcagccccaaccaca
cctgcagctctaaccacagctgccaaccacattgataagacagttccctttcccacctct
tgccagaaagactcccttgccgaccttatattcttggtggacgagtcagtggggaccaca
cagaatctgagggacctgcagaacttcctggagaatgtcaccagctctgtggatgtgaag
gacaactgcatgnggcttgggctgatgagcttcagcgacagggctcagactatttcgtcc
ctgaggtcaagtgccaaccagtctgaattccagcagcaaatccagaagctttctctccag
actggggcatctaacgttggggccgccattgagcagatgaggaaagaaggcttctcagag
tccagtggcagcaggaaggcccagggggtcccccagattgctgtgctggtcacccacaga
gcatcagatgatgtggtacgggaggctgcactggatctgcgcttggagggtgtaactatg
tttgcaatgggcatcgaaggggccaacaacacgcagttagaagacatagtgtcataccct
tccaggcagagcatttctacacacagctcctacagtcacttggaatcatacagtgggaac
ttcctgaagaagatccgcaatgaaatctggaaccaagtttctacccgtgctgaacaaatg
gagctggataaaaccggctgtgtggatacaaaggaggctgacatctattttctcattgat
gggtcgtccagcatccgtaagaaagagtttgagcaaatccagatatttatgtcatctgtg
atagacatgtttcctatcggccccaacaaagtccgggttggagttgtgcagtattcacat
aagaatgaagtggaatttcctgtctctcgctacacggatggcattgacttgaaaaaggct
gtttttaacattaagcaactcagaggtcttacattcactgggaaagccctggatttcata
ttgcctctcataaagaagggaaagtcagagaggaccgacagagtcccctgttacctcatc
gtgctgactgatgggaagtcaaacgacagcgttctagaacctgccaacagactgcgggct
gagcagatcaccatccacgccatcgggattggtgaggcaaacaagacacagctacggcag
atcgctgggaaggacgaaagggttaacttcggacagaacttcgattctctgaagaacata
aaaaatgaaatcgttcaccgcatctgctctgagaaaggatgtgaagacatgaaggcagac
atcatgtttttggtggacagttctggaagcatagggcctacaaattttgagacaatgaaa
actttcatgaaaaatctggtggggaagattcagattggcgccgacagatcccaagtcggt
gttgttcagttcagtgactataacagggaagaattccagcttaataaatactccacgcag
gaggaaatttatgcggccatagataggatgtctcccatcaacagaaacactctgacagga
ggtgcactaaccttcgtgaatgaatactttgacctttccaaggggggccgcccccaggtc
agaaagttccttatcctcctcacagatggaaaagcccaggatgaagtggggggcccagcc
atggctctcaggagcaaaagtgtgaccatcttctccgtgggtgtgtatggtgccaatagg
gctcagctggaggagatcagtggagatggcagcctggttttccatgttgagaactttgac
catctgaaggccatagagagtaaactcatctttcgagtgtgtgctctgcatgattgcaag
aggatcgaactcttagacatcgtgtttgtgctggaccactcaggcagcataggtccacgt
gagcaagaaagcatgatgaatctcaccatccacttggtgaagaaggcagacattggtagg
gaccgagtacagattggagcgctcacatactccaaccatcccgagatcctcttctatctt
aacacttactcgagtggatcggccatcgctgagcatctgaggaggcccagggacactgga
ggggacacctacacggccaaggctcttcagcattccaacatcctgttcacagaagagcac
ggcagccgcctgaagcagaacgtgaggcagctgatgattgtcatcacagacggcgtgtca
cacgaccgagataaactcgacgaggcagcacgggaactcagagacaaaggcatcaccatc
tttgcagtgggtgtaggaaatgccaaccaagatgaactggagaccatggcagggaagaaa
gaaaacactatccatgtagacaactttgacaaactgagagacatttacctgcctctgcaa
gagactctgtgtaataattcacaagagacttgtaaccttccggaagctgatgtgattttc
ctttgtgatggctctgacatggtgtctgattcagagttcgttaccatgacaactttcttg
tcagacttaattgataattttgacattgagtctcaaagaatgaagatcgggatggctcaa
tacgggagccggtatcaggaaattattgagttggaaagctctctgaacaagactcagtgg
aaatctcaggtccacagtgtggcccagagcaaggggttgccacgcattgactttgctctc
aagcatgtgagtgacatgtttgatccatccgttggcgggagaaggaacgctggtgtccct
cagactctggttgttataacatctagttctccacgctatgatgtgacagacgcggtaaag
gtcctgaaagaccttggcatctgtgtcctggctttgggcataggggatgtttataaggaa
cagcttctgcccatcacaggcaattcagaaaaaataattaccttccaagactttaataag
ctaaagaatgtggatgtgaagaagagaatggtccgtgaaatttgccagagctgtgggaaa
gccaattgctttgtggatgtagtggtcgggttcgacatttccactcaccgtcagggccag
cctttgttccagggccatccccgcttagaatcctacctcccgggcatcttggaggacatc
acctctatcagaggggtgagctgtggtgcaggtgcagaggcgcaggtgagcctggccttt
aaggtgaacagtgatcaagagttcccagccaagttccagatttatcagaaagcagtgttt
gacagcttgttgcacgtcacagtccgtggaccaactcatctggatgcaccgttcttgcag
tcactttgggacatgtttgaggaaagatctgcatccaggggccaggttctgctcatcttc
tcagacggtctccagggtgaaagcatcaccttgctggagcggcagtcagacaggctcaga
gaagcaggactcgatgctctcttggtggtgtcccttaacacattcggtcacgatgagttt
tccagctttgaatttggaaaaggatttgactacaggactcagctgaccattggaatgcta
gacctgggcaagacgctctcacagtacctgggaaacatcgcagaaagggcttgctgctgt
acattttgtaaatgtccggggattccaggacctcatggaacccggggactccaagcctcg
aagggttcttcaggtccaaaaggtagcagaggacacaggggagaggatggagaccctgga
agacgaggagaaattgggcttcaaggagacagaggagtcatgggatgcccggggactcga
ggtcaaaagggagtcaaaggactttcaggagctcagggggaacatggagaggacgggctt
gacggactggatggagaagaaggattttacggatttcgtgggggaaagggacaaaaaggc
gaccttggcgatcagggccacccaggcatcagaggcgctcctggggaagatggcgagaag
ggcttcccaggggatcccggtgacccaggaaaagacagcgacatcaaaggccagaagggc
gagaaaggagaacgaggacgacaagggataactgggcagaaggggacacatggccgtcct
agctccaaaggaagcaggggaatggaaggccggagggggccccagggtccctcagggcaa
gcaggagacccaggacctcaaggtacacagggacctgaaggactacaaggctcacaggga
tcaagcggaaatcgtggtgggaaaggagacaaaggaagtcaagggtatcagggacctcag
ggttctcctgggccagcaggacccagagggggtatcggaagacctggatttgtggggaga
aagggggaacctggagttcctggaggcccaggaccggtggggccccctggacagcgagga
aagcagggagattatggcatcccaggctatggtcggacaggaagaaaaggagttaagggc
ccaacaggattccctggggacccagggcagaagggtgacgctggcaatcctggaattcct
ggggggcctggacccaaaggattcaagggactgactctctctcaaggcttgaaaggcggg
agtggacttcaggggtctcaaggccctcctggtcggagaggtcctaaaggcacagcaggg
caacctatatatcccccctgtgaactgatccagttcctgaggaaccacagcccctgttgg
aaagaaaagtgtcctgtgtacccaacagagctggtatttgctctggaccagtcctctggt
atcacagaaaggagatttaatgaaacaagggacaccatcacttcaattgtcagtgacctc
aacatcagggagaacaactgtcccgtgggagcgcgggttgccgtggtctcctatgactca
gacaccagctatctcatccgtggctctgactaccatagcaagaagcagctcctacagctt
ctttcccagataaaataccaggtgccccggaaggccagggacattggcaatgcaatgagg
tttgtggcccgcaacgttttcaagcggacgtctgcgggaaccaacaccaggagagtggcc
gtgtttttcagcaatggccaggcagccagtagagcatccgtcctcacggccaccatggag
ttgagtgccctcgatatcagccttgccgtctttgcttataacgaaagagtgtttcttgat
gaggcttttgggtttgatgacactgggacgtttcaggtgattccagtccccccagttgga
gactatgagccactggagaagcttcggcgctgcacactttgctatgacaagtgttttcca
aacacctgtgcggaagagcctttctttcctgagaattcctacatggatgttgcattcctc
ttagacaattcccgtaacatcgccagcgatgacttccaagctgtgaaagcgctggtgagc
tcagtgatcgacagcttccacatcacttcaaacccttcagcctcagagtctggtgacagg
gttgctttgctgagctattctccctcagagagttccagaaggaagggcagggtgaagaca
gagtttgcctttacaacctacgacaaccaatcaatcatgaagaactacatctacacttcc
ctccaacagctcaatggagatgctactattggccttgccctacagtgggccatggaaggt
ctcttcctggggacccccaatccaagaaaacacaaggtcatcattgtgatttcagctgga
gaaaaccacgaggagaaggaatttgtgaagacggtggctttgagggccaaatgtcaaggc
tatgtcatatttgtgatatctctgggctccacacaaagagatgagatggaagaattagcc
agctacccacttgatcaccatctgatacagcttgggagaatgtacaaaccagatctgaat
tatattgtgaaatttctgaagccctttatatactcggtcagacgcggatttaatcagtac
ccaccaccaatgctgaaggatgactgcagacttgttgagttagagaggggagacacgctg
cctcatggcctcagattgactgctaagctgcgggaggttcctgcgagcacaaacagcctg
gctgatcaagagctgaacgctgggaaagactcatcttttgtgttggaggatcacagaggc
gaccatttggtttacgttccaagccagatgctagagccacataagttagtgagccactat
ggaaatggccgggaatctgtagcaatggcgagtctcacttctgaacatgaaagtcatggt
agagaagaactgggtcttgctcatgagcctggggatgcttctcttcaagaatattacatg
gacgtggctttcctcatagatgcttctcaacgagtaggaggacgtaacgagtttaaggaa
gtgagaacttttctaacgtcagtactggattactttcacatcgccccagctccactgacc
tctgtcttaggagacagagtggctgtcctgacctactctcccccaggctatctgccaaac
actgaagaatgcccagtctacctggaattcgatttggtcacttacaacactgtacaccaa
atgaagcatcatctccaagagtctcttcagcagctcaatggcgatgtttttattgggcat
gcccttcagtggacaattgacaatgtctttgtaggaacccccaatctgaggaaaaacaaa
gttatctttatagtaactgcaggtgaaaccaaccctttagacaaagaagttttaaggaat
gcatctctgagagccaagtgccaaggctactccatatttgtattttcctttggtccgata
cacaatgacatggagttagaagaattagcaagccaccccctggatcatcacttagtccgg
cttggccgggtacacaggccagatttggactatgtcatcaagttcatcaagccatttgtt
cactcgatcagacgtgctatcaacaaatatcccggcagagacctgcaagccaagtgtgat
aatctcaccttccctggcccagagaatgctggcacagaagacagtgcattactcatcccc
gaggtgtacagaatcgaggcaggagagagtgagctgtctggagactctggatctcaggag
cagcatttcttcctcctagggaacagtcatggtaaccattcagaaagcgctgctgatctg
atgcagcagttgtacctgctcctatcctccggggaactgatggtgaatgataaggaagag
ccttgttccgcagagaccccagctccagtgaacagcaaacaagatggcgaagatgcaaga
tga
DBGET
integrated database retrieval system