Mus caroli (Ryukyu mouse): 110302430
Help
Entry
110302430 CDS
T05910
Symbol
Topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110302430 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcal03032
]
110302430 (Topbp1)
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110302430 (Topbp1)
DNA replication proteins [BR:
mcal03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
110302430 (Topbp1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
110302430 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
110302430
NCBI-ProteinID:
XP_029337849
Ensembl:
MGP_CAROLIEiJ_G0032589
UniProt:
A0A6P7RE08
LinkDB
All DBs
Position
9:98717435..98768719
Genome browser
AA seq
1490 aa
AA seq
DB search
MSRIDQEPFLVKFLKSSDNSECFFKALESIKELQSEDYLQIITDEEALKIKENDKSLYIC
DRFSGTVFDHLKQLGCRIVGPQVVTFCMRHQQCVPRAEHPVYNMIMADITVSCTSLDKDK
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAAXLKKPILLPSWIQTLWEKSQ
EKKITKYTDVNMEDFKCPIFLGCIICVTGLNVYIFLYFVMNTGQKYECARRWNVHCVTLQ
WFHDSIEKGFCQDESIYKAETRVEAKMVPDTSTPTAQSNAESHTLADVSHISNINGSCVN
ETMFGSTTSKLECTLENLENLDISMFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGG
VRFNQLNEDVTHVIVGDYDDDVRQFWSKSSHRPHVVGAKWLLECFIKGYILPEESYIHTN
YQPAGIAVSDQPGNQTAVLEKSASFSKXALVPAKGLQQADEDLLAQYVNDDSTMVEAKLS
EALEPEVGPCPGSAHLEPCDDSTHISVQEENKSSVSHCSLDDSTAPEEXLFSQKSFLVLG
FSVENKCNIVDIIREHAGKIVSLPSRIVADYAVVPLLGCEVEATVGEVVTNTWLVTCIDN
QTLVDPKSNPLFTPVSVMSGMTPLEDCVISFSQCVGAERDSLVFLANHLGASVQEFFVRK
ANAKKGMLASTHLIVKEPTGSKYEAAKKWSLPAVNISWLLETARMGKRADENHFLVDNAP
KQEQVLETKIPNGVSSNPDLPAHPDAHLEIHRKKAVTPLDMNRFQSRAFRAVISQHSRQD
PTSPPVQQPLTKEPSLHLDTPSKFLSKDKLFKPSFDVTDALAALETPNAASQKRKLSSPL
SEVIVRNLTVALANSSRNTDSHSASPQLKGAHLEEEETRKPLDSVVVCVSKKLSKKQSEL
NGVAASLGAEYRWSFDETVTHFIYQGRANDSNREYKSAKERGVHVVSEHWLLECAQEYKH
LPESLYPHTYNPKMSLDINTVQDGRLCNSRAPLAVSASKDDGTDHLSVEGNETNTMGTND
KESPLLNGSGRDDCKGALTQALEMRETFQKQLQEIMSATCIVKTPAQKTCTSRSSCNSAA
STPDSTRSVRSGRSRVLEALRQSRQVVPDVNTEPSQNEQIIWDDPTAREERARLASNLQW
PSYPTQYSELQVEIKKLDDSPSRKPVYHSEIAEQASCVTQAPGHPGSEEAEPPTAERRLI
PELQAPSVASPLAKPPVAPQPADKIETLEETHRKVKKQYVFQMSSLNSQERIDYCRLIKD
LGGSVIEKQSSDPSCTHMVVGYPLRNEKYLASMAAGKWVLHRSYLDACKTAGHFVQEEDY
EWGSSSILDALPDVTEHQQKLALAAMRWRKRIQQSQKSGIVEGAFSGWKAILRVDRPREA
GFKRLLQAGGAKVLPGHPEPLLKDATHLFCDFNKLKPDDCRVFIAEATAQNMVCLKTEYI
ADYLMLESPPCADNYRVSEAALFHNKKGGPGLPQKRKTPAENVVKRPRVH
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaattgaccaagagccgtttcttgtgaagtttttaaagtcttcggacaattca
gaatgtttttttaaagctcttgagtcaataaaggaattacaatcagaagattatcttcag
attattacagatgaggaagcattgaagataaaagagaatgacaaatcgctttatatctgt
gaccgtttcagtggcactgtttttgatcaccttaaacagcttggctgcaggattgttggt
cctcaagtggtcacgttttgtatgcgccaccagcaatgtgtcccaagagctgagcatcca
gtctacaacatgataatggctgacataactgtgtcctgtacaagcctggataaagacaaa
cgggaagaagttcataaatacgtacaaatgatgggtggacgagtatacagagaccttaat
gtatcagtcactcaccttattgcaggagaagttgggagcaagaagtacttagttgctgct
aanctgaagaagccgattttgctcccttcttggatacaaaccctttgggagaagtcacaa
gaaaaaaaaataaccaagtacactgatgtaaacatggaagactttaagtgtcctattttt
cttggttgcattatctgtgtgactggcttaaatgtctatatatttctgtatttcgtaatg
aacacaggacaaaaatacgaatgtgccaggagatggaatgtgcactgtgtgaccctgcaa
tggtttcatgacagtattgagaaaggcttttgtcaggatgaatctatatacaaggctgaa
accagagtagaagcaaagatggtgcctgatacttcaacacccactgctcagagcaatgct
gaaagtcacacgctcgcagatgtcagccatatatccaacataaatggcagctgtgtaaat
gaaacaatgtttggttcaactactagcaaacttgaatgtacncttgaaaacctagaaaat
ctggacatcagtatgtttcaagctcctgaagacttattagatggctgtcggatatatctt
tgtggttttagtggcagaaagctggataagctgagaaggcttattaacagtggaggtgga
gttcgatttaatcaactaaatgaagatgtaactcatgtaattgtgggagattacgatgac
gacgtgaggcagttctggagcaaatcatctcacaggcctcatgtagtgggagcaaagtgg
ttgctggagtgttttattaaaggatatatacttcctgaagagtcatatatccacactaac
taccagccagctggaattgcagtttccgatcagcctggaaaccagacagctgtcttagaa
aagagtgcctcattctccaagagngcccttgttcctgctaaggggcttcagcaggccgac
gaggatctgcttgctcagtatgtaaacgacgactccacgatggttgaagctaagctatct
gaagctttagagcctgaagtcgggccttgccctggttctgctcaccttgagccctgtgat
gattccactcacatttctgtgcaagaggaaaacaagtcgtctgtgagccattgcagcctt
gatgactctacagctcctgaagaagncttattcagccagaagagtttccttgtcttgggc
tttagtgttgaaaataaatgtaatattgtagacatcataagagagcacgctggcaagatt
gtgtcccttcccagcagaattgttgctgactatgctgtggttccactgctgggatgtgag
gtagaagcgacagtgggagaagttgttacaaacacgtggctggttacgtgtatagacaac
cagacattagttgatcccaagtcgaatcccctcttcacaccagtctcggtnatgtcggga
atgactcctttagaggactgtgtgatttccttcagtcagtgtgtgggggcagaaagagat
tccttggtattcttagcaaatcaccttggagcaagtgttcaagaattctttgttcgcaaa
gcaaatgcaaagaaaggcatgctcgccagcacacatcttatagtgaaggaaccgactggt
tccaaatacgaagctgcaaagaaatggagtttgccggcagttaacatttcatggctctta
gaaactgcgagaatggggaagagagcagatgaaaaccattttctggttgacaatgcacct
aaacaagaacaagtattagaaactaagataccaaatggagtgagttcaaatccagatttg
ccagcacatcctgacgcacacttggaaattcacagaaaaaaggcggttacacctttggac
atgaatcgctttcagagtagagccttccgtgctgtcatttcacagcacagcaggcaggac
cccacctctccaccagtacagcagccacttacgaaggagccctccttacacctggacaca
ccatcaaagtttctgtccaaggacaagcttttcaagccatcctttgatgtgacggatgca
cttgcagccctggaaaccccaaatgctgccagtcagaagcggaaactaagctcaccactc
tctgaagtcatcgtcagaaacctgacagttgctttggcaaatagttcccgaaacactgac
agtcattctgccagccctcagctgaagggtgcccatttggaggaggaagagactcggaaa
ccacttgacagcgttgtggtgtgtgtgagtaagaagctcagtaagaagcagagtgagctc
aatggggttgcagcatcactgggagcagagtacaggtggagtttcgatgagaccgttact
catttcatttaccagggtcgggcaaatgacagtaatcgagaatataaatctgcaaaggaa
agaggggtgcacgtcgtgtccgagcattggttattagagtgtgctcaagagtataagcat
cttcctgaatctctttatccacacacttacaatcccaaaatgagcttggacatcaacacg
gtgcaagatgggcggctctgtaacagccgggcacccttggcagtttctgcatctaaggat
gatgggacagatcatctgtctgtagaaggaaatgagacaaacactatgggcacaaatgac
aaagagtcacctctgttgaatgggagtggaagagatgactgtaaaggagctctgacccag
gccttggagatgagagagaccttccagaagcagctgcaagagatcatgtcagccacctgc
attgtgaagacgcctgcccagaagacttgcacgtcaagaagcagttgtaacagtgctgct
tcaactcctgacagcactcggtctgttcggagtggacgaagccgagtcctggaggcactc
aggcagtctcgacaggtagtacctgatgtgaacacagagccctcccaaaatgagcagatc
atttgggatgacccaacagcaagggaagagagagcaaggctcgccagcaacttacagtgg
cccagctacccaacacagtattctgagcttcaggttgagattaaaaaactggatgattct
ccttctcgaaagcctgtataccattcagaaattgctgagcaggcctcgtgtgttactcaa
gccccagggcacccaggctctgaagaagcagagcctccaacagcagaaaggcgtctgatc
ccggagctgcaagccccctctgtagcttccccactggctaagccgcctgtggccccacaa
cctgcagacaagattgaaacactggaggagacgcacagaaaagttaaaaaacagtatgtg
ttccagatgtcgtctctgaattctcaagagcggattgactactgtcgcctgattaaagac
ttaggtgggtcggtgatcgagaagcagagctctgaccccagctgcacacacatggttgtg
ggctacccactgcgcaatgagaagtacttagcttctatggcagctggtaaatgggtgctt
catcgttcctacctagacgcttgcaagacagctgggcactttgtgcaggaagaagactac
gagtggggaagtagctccatacttgatgctcttcctgacgtcactgagcaccagcagaag
cttgcacttgcggcaatgagatggaggaaaagaatccagcaaagtcaaaaatcaggcatt
gttgagggagcatttagtggctggaaagctattttacgtgttgatcggccccgagaagcc
gggttcaagcgccttcttcaggcagggggagcaaaggtgttacctggtcatccagaacct
ttacttaaagatgctacacatctcttttgtgacttcaataaactgaaacctgatgactgc
agagttttcatcgcagaggctactgcccagaacatggtctgcttgaaaacagaatatatc
gctgattatctcatgctggaatcccctccttgtgcagataattaccgtgtatccgaagct
gctttattccataataagaaaggtgggcctggattaccacagaagaggaaaactcctgca
gagaatgtagtcaaacggcctcgagtacactga
DBGET
integrated database retrieval system
