Mus caroli (Ryukyu mouse): 110302546
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Entry
110302546 CDS
T05910
Symbol
Trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
110302546 (Trim71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110302546 (Trim71)
04121 Ubiquitin system [BR:
mcal04121
]
110302546 (Trim71)
Enzymes [BR:
mcal01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110302546 (Trim71)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110302546 (Trim71)
Ubiquitin system [BR:
mcal04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110302546 (Trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
zf-RING_UBOX
COG5_N
BBP1_C
Motif
Other DBs
NCBI-GeneID:
110302546
NCBI-ProteinID:
XP_021029014
Ensembl:
MGP_CAROLIEiJ_G0032771
UniProt:
A0A6P5QGU2
LinkDB
All DBs
Position
9:complement(109970435..110023231)
Genome browser
AA seq
855 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSNSSASSSSSQTSTSSAGGGGPGAAARRLHVLPC
LHAFCRSCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLD
AVVATAEEPPPKNGRAGGGPGGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLM
RRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAASAAQQ
LGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTLGRHGGHSFAY
LQDALQDSRALTIQLLADAQQGRQALQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKK
ALEDRECELLWKVEKIRQVKAKSLFLQVEKLRQSLTKLESTISAVQQVLEEGRALDILLA
RDRMLAQVQELKTIRGLLQPQEDDRIMFTPPDQALYLALKSIGFVSSGAFAPLTKAAGDG
IKRALQGKVASFTVMGYDHDGEPRHSGGDLMSVVVLGPDGNLFGAEVSDQQNGTYIVSYR
PQLEGEHLVSVTLYNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVS
VDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIIVADKD
NHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVF
LNKYGFEGSLWKHFDSPRGVAFNNEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGSGNGQ
FLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPDG
LIVVVDFGNNRILIF
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttcccggagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgcccgcgccgctctcctccaactcgtccgcctcgtcgtcgtcctcgcagacttccacg
tcgtcggcgggcggcggcggccccggggcggcggcgcggcgtcttcacgtcttgccctgc
ctgcacgccttctgccggtcgtgccttgaggcgcaccggctgcccgctcccggaggcgcg
ggccccgccgaggcgctgaagctgcgctgccccgtgtgtgaccagaaggtggtcctggcc
gaggcggcgggcatggacgcgctgccatcgtccgccttcctgctcagcaacctgctggac
gccgtggtggccaccgccgaagagccgccgcccaagaacgggcgcgcgggcggcggcccc
gggggcgcgggcggccacagcaaccaccggcaccacgcgcaccacccggcccagcgcgcc
gccgctcccgcgccgcagccgccgcccggcccggccgcctcccccgggtcgctgctgatg
cgccggccgcacggctgcagctcctgcgacgagggcaacgccgcctcgtcgcgctgcctc
gactgccaggaacacctgtgcgacaactgtgtccgcgcgcaccagcgcgtccgcctcacc
aaggaccattacatcgagcgcggccctccggggcctgcggccgcctccgcggcgcagcag
ctggggctcgggccgcccttcgcaggcgcgcccttctccattctgtcggtgttcccggag
cgcctcggcttctgccagcaccacgacgacgaggtcctgcatctatactgtgacacctgc
tctgtccccatctgcagagagtgcacactaggccgccacggtggccacagcttcgcctac
ctccaggatgccctgcaggactctcgggcactcaccatccagctgctggctgacgcccag
cagggccgccaggctctccagctgagcatcgagcaggcccagactgtggcagaacaggtg
gagatgaaggcgaaggtggtccagtctgaggtcaaggccgtcacagctcgccacaagaag
gccctggaggatcgggagtgtgagctgttgtggaaggtggagaagattcggcaggtgaag
gcgaagtctctgttcctgcaggtggagaagctgaggcagagtctcaccaagctggagagc
accatcagcgccgtgcagcaggtcctggaagagggccgcgccctggacatcctgttggcc
cgagaccggatgctggcccaggtgcaggagctcaagaccatccggggcctcctgcagccc
caagaagatgaccgcattatgttcacgccccctgaccaggccctgtatctcgccctcaag
tctattggctttgtcagcagcggggccttcgccccactcacgaaggctgcaggagatggc
atcaagcgtgcccttcagggaaaggtggcctctttcactgtcatgggctatgaccacgat
ggtgagccccgccactcgggaggtgacctgatgtcagttgtggtcctcggccccgatgga
aacctgtttggtgcagaagtgagcgaccagcagaatggtacttacatagtgagctacagg
ccccagcttgagggtgagcacttggtgtccgtgacattgtacaatcagcacatagagaac
agccccttcaaggtcgtggtcaagtcgggccgcagctatgtgggcatcgggctccccggg
ctgagcttcggcagtgaaggtgacggggaaggcaagctctgcaggccctggggtgtgagt
gttgataaggagggttacatcatagtggctgaccgaagcaataacagaatccaggtgttt
aagccctgtggctccttccaccacaagtttggtaccctagggtctcgtcctgggcagttt
gaccgaccggctggggtggcttgtgatgcctcccgcaggatcatagtggccgacaaagac
aatcatcgcattcagatcttcaccttcgagggccagttccttcttaagtttggtgagaaa
ggcaccaagaacgggcagtttaactacccgtgggatgtagcagtgaattctgagggcaag
atcctggtttcagacacccggaatcatcgcatccagttgttcggacccgacggggtcttc
ttgaacaagtacggcttcgagggatctctctggaagcacttcgactctccacggggcgtg
gctttcaacaatgaaggtcacctggtagtcaccgacttcaacaaccaccggcttctggtt
attcaccctgattgccaatctgcccgcttcttgggctcggagggctcaggcaatgggcag
ttcctgcgaccacagggtgtggctgtggaccaggaagggagaatcatcgtagccgattcc
agaaatcaccgcgtgcagatgtttgaggccaacggcagcttcctgtgcaagtttggtgct
caaggcagtggcttcgggcagatggaccgcccctcaggtatcgcggtcaccccggatgga
ttgatcgtcgtggtggactttggcaacaatcgaatcctcatcttctaa
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integrated database retrieval system
