Mus caroli (Ryukyu mouse): 110302646
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Entry
110302646 CDS
T05910
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha isoform X2
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcal04040
]
110302646 (Scn11a)
Ion channels [BR:
mcal04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110302646 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
110302646
NCBI-ProteinID:
XP_021029100
Ensembl:
MGP_CAROLIEiJ_G0032805
UniProt:
A0A6P5QH16
LinkDB
All DBs
Position
9:complement(115181080..115247962)
Genome browser
AA seq
1765 aa
AA seq
DB search
MEERYYPVIFPDERNFRPFTSDSLAAIEKRIAIQKEKKKSKDKAATEPLPRPQLDLKASR
KLPKLYGDVPHDLIAKPLEDLDPFYKDHKTFMVLNKKRTIYRFSAKRALFILGPFNPVRS
FMIRISVHSVFSMFIICTVIINCMFMANNSSMDSRPSSNIPEFVFIGIYVLEAVIKILAR
GFIVDEFSYLRDPWNWLDFIVIGTAIAPCFLGNKVNNLSTLRTFRVLRALKAISVISGLK
VIVGALLRSVKKLLDVMVLTLFCLSIFALVGQQLFMGILSQKCIKDNCGPNPLSNKDCFV
KENDSEDFIMCGNWLGRRSCPDGSTCNKTTFNPDYNYTNFDNFGWSFLAMFRVMTQDSWE
KLYRQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQ
EAQQLLREEKEALVAMGIDRTSLNSLQASSFSPKKRKFFGSKTRKSFFMRGSKTARASAS
DSEDDASKNPQLLEQTKRLSQNLPVELFDEHVDPLHRQRALSAVSILTITMQEQEKSQEP
CFPCGKNLASKYLVWECSPRWLCIKKVLQTIMTDPFTELAITICIIINTVFLAMEHHNMD
NSLKDILKIGNWVFTGIFIAEMCLKIIALDPYHYFRHGWNIFDSIVALVSLADVLFHKLS
KNLSFLASLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIFSVVGMRLF
GAKFNKTCSTSPESLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQEMEGSPLCIIVFV
LIMVIGKLVVLNLFIALLLNSFSNEEKDGNPEGETRKTKVQLALDRFSRAFYFLAHALQN
FCCKRCRRQNSPKPNEATESFAGESRDTATLDARSWKEYDSEMTLYTGQAGAPLAPLAKE
EDDMECCGECDASPSSQPSEEAQACDLPVKTKQLPSPDDHGVEMEVFSEEDPNFTIQSAR
KKSDAASMLSECSTIDLNDIFRNLQKTVSPQKQPDRCFPKGLSCIFLCCKTIKRKSLWVL
WWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVHLSSRPQVEKLLKCTDNIFTFIF
LLEMILKWVAFGFRKYFTSAWCWLDFLIVVVSVLSLTNLPNLKFFRTLRALRPLRALSQF
EGMKVVVNALMSAIPAILNVLLVCLIFWLIFCILGVNFFSGTFGRCINGTDINKYFNASN
VPNQSQCLDSNYTWKVPNVNFDNVGNAYLALLQVATYKGWLDIMNAAVDSRGKDEQPEFE
ANLYAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDIFMTEEQKKYYNAMKKL
GTKKPQKPIPRPLNKCQAFVFDLVTSQVFDVIILGLIVTNMIIMMAESEGQPIEVKKIFD
ILNIVFVVIFTVECLIKVFALRQHYFTNGWNLFDCVVVVLSIISTLVSGLENSNVFPPTL
FRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNWFCK
VKRGSGIDDIFNFDTFSGSMLCLFQITTSAGWDALLNPMLEPKASCNSSSQDSCQQPQIA
IVYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFEIFYEIWEKFDPEATQF
IQYSSLSDFADALPEPLRVAKPNRFQFLMMDLPMVMGDRLHCLDVLFAFTTRVLGNSSGL
DTMKAMMEEKFMEANPFKKLYEPIVTTTKRKEEEECAAVIQRAYRRHMEKMIKLRLKGRP
SSPPQVFCNGDLSSLDVPKIKVHCD
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaggtactatccagtgatcttcccagacgagaggaatttccgccccttcact
tccgactctttggctgcaatagagaagcggattgccatccaaaaagagaagaagaaatcc
aaagacaaggcagcaactgagcccctgcctcggcctcagctcgacctaaaggcctccaga
aagttacctaagctttatggtgacgttccccatgaccttatagcgaagcccctggaagat
ctggacccattctacaaagaccataagacattcatggtattgaacaagaagagaacaatc
tatcgcttcagcgccaagagggccttgttcattctggggccttttaatcccgtcaggagc
ttcatgattcgcatctctgtccattcagtcttcagcatgttcattatctgcacagtgatc
atcaactgtatgttcatggctaataattcttctatggacagtcgtcctagcagtaacatt
cctgaattcgtcttcattgggatttatgttttagaagctgtgattaaaatattggcaaga
ggcttcatcgtggatgagttttcctacctccgagatccttggaactggctggacttcatt
gtcatcggaacagcgatagcaccttgttttctcggtaacaaagtcaataatctttccact
ctacgtaccttccgagtgttgagagctctgaaagcgatttctgtcatctcaggtctgaag
gtcatcgtgggtgccctgctgcgctccgtgaagaagctgttggacgtgatggtcctcact
ctcttttgcctcagcatctttgccctggttggtcagcagctcttcatgggaatcctgagc
cagaaatgtattaaggacaactgtggccctaaccctttatccaacaaggattgctttgta
aaggaaaatgatagcgaggacttcataatgtgtggcaactggctcggcagaagatcctgc
cctgatggttctacgtgcaataaaaccacatttaacccagattataattatacaaacttt
gacaactttggctggtcttttctcgccatgttccgggttatgactcaagactcctgggag
aagctttatcgacagatccttcgcacctccgggatctactttgtcttcttcttcgtggtt
gtcatcttcctgggctctttctacctgcttaacttaaccctggctgtcgtcaccatggct
tacgaggaacagaacagaaatgtcgctgccgagacagaggccaaggagaagatgtttcag
gaagcccagcagctgttgagggaggagaaggaggctctggttgccatggggattgacaga
acttcccttaattccctccaagcttcgtccttttccccaaagaagaggaagttttttggc
agtaagacaagaaagtccttctttatgagagggtccaagacagcccgagcctcagcgtcc
gattcagaggacgatgcctctaaaaacccacaactccttgagcaaacaaaacgactgtcc
cagaacttgcctgtagaactctttgatgagcacgtggaccccctccataggcagagagcg
ctgagcgccgtcagtatcttaaccatcaccatgcaggaacaagaaaaatcccaggagcct
tgtttcccgtgtgggaaaaacttggcatccaagtacctggtgtgggaatgtagtcctcgg
tggctgtgcataaagaaggtcctgcagactatcatgacagaccccttcactgagctggcc
atcaccatctgcatcatcatcaacactgtcttcttggccatggaacaccacaacatggac
aactccttaaaagacatactgaaaatcggaaactgggttttcactggaattttcatagcg
gaaatgtgtctcaagatcattgcgctagacccttaccactacttccggcacggctggaac
atctttgacagcattgtggcccttgtgagtctcgctgacgtgctcttccacaaactgtct
aaaaacctctccttcttggcttccctcagagtgctgagggtcttcaagttagccaaatcc
tggcccacattaaacactctcattaagatcatcggccactccgtgggcgcgctcggaaac
ctgactgtggtcctaacaatcgtggtcttcatcttttccgtggttggcatgcggctcttt
ggtgccaagtttaacaagacttgctccacctctccggagtccctccggcgctggcacatg
ggtgatttctaccattccttcctggtggtgttccgcatcctctgtggggagtggatcgag
aacatgtgggaatgtatgcaggagatggaaggctccccgctgtgtatcatcgtcttcgtg
ctgatcatggtgatcgggaagcttgtggtgcttaacctcttcattgccttgctgctcaat
tccttcagcaatgaggaaaaggatgggaacccagaaggagagaccaggaaaaccaaagtg
cagctagccctggatcggttcagccgggcgttctacttcctggcgcacgctcttcagaat
ttctgttgcaagagatgcaggaggcaaaactcgccaaagccaaatgaggcaacagaaagc
tttgctggtgagagtagagacacagccaccctggatgcaaggtcctggaaggagtatgat
tcagaaatgactctgtacaccgggcaggcgggggctccactggccccactggcaaaagaa
gaggacgatatggaatgctgtggtgaatgtgacgcctcaccttcctcacaacctagtgag
gaagctcaggcctgtgacctccctgtgaagaccaagcagctccccagcccagatgaccac
ggggttgaaatggaagtgttttccgaagaagatccgaattttaccatacagagtgctcga
aagaagtctgatgcagcaagcatgctctcagaatgcagcacaatagacctgaatgatatc
tttagaaatttacagaaaacagtttccccccagaagcaaccagatcgatgctttcccaag
ggcctcagttgtatcttcctatgctgcaaaacaatcaaaagaaagtccctctgggtcctg
tggtggaatcttcggaaaacctgctaccaaatcgtgaagcatagctggtttgagagcttc
ataatctttgtcatcctgctgagcagcggagcactgatattcgaagatgtccatctttcc
agccggccccaagttgagaaattactgaagtgtaccgataatattttcacatttattttt
ctcctggaaatgattctgaagtgggtggcctttggattccggaagtatttcaccagcgcc
tggtgctggctcgatttcctcattgtggtggtgtctgtgctcagcctcacgaacttacca
aacttgaagttcttccggactctgcgagcgcttagacctctgcgggcactgtctcagttt
gaaggaatgaaggttgttgtcaatgccctcatgagtgccatacctgccatcctcaatgtc
ttgctggtctgcctcattttctggctcatattttgtatcctgggagtaaattttttttct
gggacgtttggaagatgcattaacggaacagacataaataaatatttcaacgcttccaat
gttccaaaccaaagccaatgtttagatagtaattacacgtggaaagtcccgaatgtcaac
tttgacaacgtggggaatgcctaccttgccctgctgcaagtggcgacctataagggctgg
ctggacattatgaatgcagctgttgattccagagggaaagatgagcagccggaatttgag
gcgaatctatacgcatacctttacttcgtggtttttatcatcttcggctcatttttcacc
ctgaacctctttatcggtgttatcatcgacaacttcaatcagcagcagaaaaagataagt
ggccaagacatttttatgacagaagaacagaagaaatattacaatgcaatgaaaaagtta
ggaaccaagaagcctcaaaagcccatcccaaggcccctgaacaaatgtcaagccttcgtg
ttcgacttggtcacaagccaggtctttgacgtcatcattctaggtcttattgtcacaaac
atgattatcatgatggctgaatctgagggccagcccatcgaagtgaagaaaatctttgat
atcctcaacatagtcttcgtggtcatctttaccgtagagtgtctcatcaaagtctttgct
ttgaggcaacactacttcaccaatggctggaacttatttgattgtgtggtcgtggttctt
tctatcattagtaccttggtctctggcttggagaacagcaacgtcttcccgcccacgctc
ttcagaattgtccgcttggctcggatcggtcgaatcctcagactggtccgggcagctcga
ggaatcaggacactccttttcgcgttgatgatgtctctcccctctctcttcaacatcggt
ctgcttctctttctggtgatgttcatttatgccatctttgggatgaactggttttgcaaa
gtgaagagaggctctgggattgatgacatcttcaactttgacactttctcgggcagcatg
ctctgcctcttccagataaccacttcggccggctgggatgctctcctcaaccccatgcta
gaacccaaagcctcttgcaattcctcctcccaagacagctgccagcagccgcagatagcc
atagtctacttcgtcagctacatcatcatctcctttctcattgtggttaacatgtacata
gctgtcattctagagaacttcaacacagccacggaggagagcgaggaccccctgggcgaa
gacgactttgaaatcttctatgagatctgggagaagtttgaccccgaagcaacacagttc
atccagtactcatccctctctgacttcgccgatgccctgcccgagccgttgcgcgtggcc
aagcctaacaggtttcagtttctcatgatggacttgcccatggtgatgggtgatcgcctc
cattgcctggatgttctctttgcgttcaccaccagggtcctcgggaactccagcggcttg
gataccatgaaagccatgatggaggagaagttcatggaggccaatccgttcaagaagttg
tacgagcccattgtcaccaccaccaagaggaaggaggaggaggaatgtgccgctgtcatc
cagagggcgtaccgcagacacatggagaagatgatcaagctgaggctgaaaggcaggcca
agttcaccgccccaggtgttttgcaatggagacttgtctagcttggatgtgcccaagatc
aaggttcactgtgactga
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integrated database retrieval system
