Mus caroli (Ryukyu mouse): 110302953
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Entry
110302953 CDS
T05910
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03015
mRNA surveillance pathway
mcal05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110302953 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
110302953 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110302953 (Hbs1l)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110302953 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBS1_N
Motif
Other DBs
NCBI-GeneID:
110302953
NCBI-ProteinID:
XP_021029460
Ensembl:
MGP_CAROLIEiJ_G0015162
MGP_CAROLIEiJ_G0015163
UniProt:
A0A6P5Q9L1
LinkDB
All DBs
Position
10:17328761..17401048
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AA seq
611 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLRDS
SNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILIEAILKHKFDVQKALSVVLEQDG
VQPLKEKSERAVCAEQPSKGVLFSSFGVSPQDVHHSFLQSENHLDSSSKPFDCCSSIAEY
GSHSSSLEPRHYLLHRKEKHDRSQSEKELESCKLTKELALAHLIHDTPRDSCARQPSARL
PPSASGQSELLKSLGADEVRPPASACAPEEDFTFKGIRDLESPMREDIVTSGSLGIQSSS
LPDFQSTPVQNVSGSLSNPLLLSSPVENNSTINTEVEQSAKNNIVKNNSLPFSQRESPSL
AELFEEHRGNSSGQCFTLSDLCNQSPASLGSLPLSQLANRSQSANGVSELTGSLSSLAFC
KAAPTRDLENLSLSDLIAKTIELDDSQIKRDSFELSLSEMRSPEVDSNIDLSVLIKTPEF
VPKPVVAPSVALTPDTKVLSSKLGKPSSSTKDSMKAKGASLARKAPLSLPWTKALAARPS
AFASTLCLRYPLKSCKRRTLELYKTFLYSRQVQDVSDKEISPLAAITPFDFKSASPDDIV
KANQKKAFTRE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcggaacgtccggggctataactacgatgaagattttgaagatgatgat
ctgtatgggcagtctgtggaggatgactactgtatctcaccatcaacagccgctcagttc
atttactcacgccgtgacaaccctgaagaagaatatggctatgaagatctgagagactct
tctaattctcttttgaatcaccaattaagtgaaattgaccaagctcgcctgtattcatgc
cttgatcacatgagagaggtactgggggacgctgtgcctgatgacatactgattgaggca
attctgaaacacaaatttgatgtgcagaaggctttgtccgtggttctggaacaagatggt
gtgcagcctttgaaggagaagagtgagcgagcagtgtgcgcagaacagccttcaaaagga
gtcttattttcttcctttggagtttcaccccaagatgttcaccattcttttcttcaatca
gaaaatcatttggatagcagtagcaaaccttttgattgttgtagctcaatagcagaatat
ggatcccatagttcttcacttgagccacgtcactatttacttcatagaaaagagaaacat
gacagatcccaaagtgaaaaggaactagaatcatgtaagttaacaaaagagctggctcta
gctcacctgattcatgatacgccaagagattcttgtgcacgccagccgtcagccagactg
ccaccctcagccagcgggcagagtgagcttcttaagagcctaggtgctgatgaggtgaga
cctcctgcatctgcctgtgctcctgaagaggattttaccttcaaagggatccgagactta
gagtccccaatgagggaggacatagtaactagtggttctttgggaattcagagcagctca
ctacctgattttcaaagtactcccgtgcagaatgtctcgggaagcttaagtaatccactg
ctcttatctagcccagtggaaaataattccactataaacactgaagttgaacaaagtgcc
aagaataatattgtaaaaaataacagtttaccattttcccagcgtgaaagtccatcccta
gctgagctgtttgaggaacacagaggaaacagctctggccagtgctttactttgtctgac
ctgtgtaaccagtcacctgccagcttgggttcccttcccctgtcacaactggcaaaccgc
tcgcagtctgctaacggagtatcagagttaacaggatctctgtcatctttggcattttgt
aaagctgctcccacgagagacctggagaatttatccctttctgatttgattgcaaaaacg
attgaactagacgattctcagattaagagagattcttttgagcttagtttatctgaaatg
aggagtcctgaagttgattcaaatattgatcttagtgtcttgataaaaactccagagttt
gtcccaaagcctgtagttgccccatcagttgctctaacaccagacactaaagttctgagt
tcaaagttagggaaaccttccagttccactaaggacagtatgaaagccaaaggagcctcc
cttgctaggaaagcccctctgtctctgccgtggaccaaggcccttgctgctaggccctca
gctttcgcttcaacgctgtgtcttcgttacccactgaaaagctgcaagaggcgcactctt
gaactctacaagactttcctttatagcagacaagttcaagatgtatcggacaaagaaata
agtcctcttgcagcaataacgccatttgacttcaaatcagcgtctcctgatgacattgta
aaagctaatcaaaagaaggcgtttactagagaatag
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