Mus caroli (Ryukyu mouse): 110303293
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Entry
110303293 CDS
T05910
Symbol
Rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcal03016
]
110303293 (Rtcb)
Enzymes [BR:
mcal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110303293 (Rtcb)
Transfer RNA biogenesis [BR:
mcal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110303293 (Rtcb)
Prokaryotic type
tRNA splicing ligases
110303293 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
110303293
NCBI-ProteinID:
XP_021030027
Ensembl:
MGP_CAROLIEiJ_G0015689
UniProt:
A0A6P5QHM9
LinkDB
All DBs
Position
10:complement(79814319..79835555)
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtaactacaacgatgagctacagttcttggacaagatcaataaaaactgctgg
aggatcaagaagggctttgtgcccaacatgcaggttgaaggagtgttttatgtgaatgat
gctctggaaaaactaatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggctttctgccagccatgaagcagattggcaatgtggcagccctccctggaatagttcat
cggtctatcgggcttcctgatgtccattcaggctatgggtttgccatagggaacatggct
gcctttgatatgaatgaccctgaggccgttgtatccccaggtggagtcggatttgatatt
aactgtggtgtccgcttgctaagaaccaatttagatgagagcgatgtacagcctgtgaag
gaacaacttgcccaagctatgtttgaccacatccctgttggggtgggatcaaaaggtgtc
attccaatgaatgccaaagacttggaggaggcattggagatgggggtggactggtccctg
agggaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagccgaccccaataaggtctcaccccgggcaaagaaaaggggccttcctcagttggga
accctgggagcaggcaaccattatgcagaaatccaggttgtagatgagattttcaatgag
tatgccgccaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagctacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattatagtcaatgaccggcagttggcttgtgctcggattgcatcc
ccagagggacaagactatctaaagggaatggctgcagctggaaactatgcctgggttaac
cgctcctctatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gatgacctggacctgcatgtgatctatgatgtgtctcacaatatcgccaaagtggagcag
cacgtggtggatgggaaggaacggacgctgctggtgcacaggaaaggatccacccgtgct
ttcccgcctcaccaccccctcattgctgtggattatcaactcactggacaaccagtgctt
attggtggcaccatggggacctgtagttatgttctgactggcactgaacaaggcatgacc
gagacctttggaacaacctgtcatggagcgggccgtgctttgtccagagcaaaatcacgt
cgtaacttagatttccaagatgtcttagacaaactggcagacatgggaatcgcaatccgg
gttgcttcacccaagctggttatggaggaggcaccagagtcctataagaatgtgacagat
gtcgtgaacacctgccatgatgctgggatcagcaagaaagccattaaactgagaccaatt
gctgttattaaagggtag
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