Mus caroli (Ryukyu mouse): 110303715
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Entry
110303715 CDS
T05910
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110303715 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110303715 (Col18a1)
00535 Proteoglycans [BR:
mcal00535
]
110303715 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
mcal00536
]
110303715 (Col18a1)
Exosome [BR:
mcal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110303715 (Col18a1)
Proteoglycans [BR:
mcal00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110303715 (Col18a1)
Glycosaminoglycan binding proteins [BR:
mcal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110303715 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
110303715
NCBI-ProteinID:
XP_021030571
Ensembl:
MGP_CAROLIEiJ_G0015478
UniProt:
A0A6P5QJ01
LinkDB
All DBs
Position
10:complement(71084908..71202255)
Genome browser
AA seq
1774 aa
AA seq
DB search
MAPDPSRCLCLLLLLLSCRLVPASADGNSLSPLNPLVWLWPPKTSDSLEGPVSKPQNSSP
VQSTENPTTHVVPQDGLTEQQTTPASSELPPEEEEEEEDRKAGQGGSPATPAVPIPLVPP
AASPDTKEENVAGVGAKILNVAQGIRSFVQLWDEDSTIGHSTGTGVPDSSIPTVLPSPAE
LSSAPQGSKTTLWLSSAIPSSPDAQTTEAGTLAVPTQMPPFQSNLQAPLGRPSVPPDFPG
RAFLSSPRIRAPPWGNQEPPRQPQHLEGKGLLPMTARSSQQHRHSDVHSDIHGHVPLLPL
VTGPLVTASLSVHGLLSVPSSDPSGQLSQVAALPGFPGTWVSHVAPSSGTGLSNDSALAG
NGSLTSTSRCLPLPPTLTLCSRLGIGHFWLPNHLHHTDSVEVEATVQAWGRFLHTNCHPF
LAWFFCLLLAPSCGPGPPPPLPPCRQFCEALEDECWNYLAGDRLPVVCASLPSQEDGYCV
FIGPAAENVAEEVGLLQLLGDPLPEKISQIDDPHVGPAYIFGPDSNSGQVAQYHFPKLFF
RDFSLLFHVRPATEAAGVLFAITDAAQAVVSLGVKISEVRDGQQNISLLYTEPGASQTQT
GASFRLPAFVGQWTHFALSVDGGSVALYVDCEEFQRVPFARSSQGLELERGAGLFVGQAG
TADPDKFQGMISELKVRRTPRVSPVHCLDEDDDDEDRASGDFGSGFEESSKSHKEDTSLL
PGLPQPPPVTSPPLAGGSTTEDPRTEETEEDTTVDSIGAETLPGTDSSGAWDEAIQNPGG
GLIKGGMKGQKGEPGAQGPPGPAGPQGPAGPVVQSPNSQPVPGAQGPPGPQGPPGKDGIP
GRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPPGPPGPSFRQD
KLTFIDMEGSGFSGDIESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNGSYAPGPAGLPGV
PGKEGPPGFPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPIGMPGKSGL
AGSPGPVGPPGPPGPPGPPGPGFAAGFDDMEGSGIPFWTTARSSDGLQGPQGSLGLKGDP
GVAGPPGAKGEVGADGAQGIPGPPGREGAAGPPGPKGEKGMPGEKGNPGKDGVGRPGLPG
PPGPPGPVIYVSNEDRAIVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGLPGPKGEKGE
PGTIFSPDGRALGHPQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKG
EPGDASLGFSMRGLPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGD
KGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGQKGERGEPGAPGGGFFSSSVPGPPG
PPGYPGIPGPKGESIQGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSV
PGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAEREELYVRVRNG
FRKVLLEARTALPRGTGNEVAALQPPLVQLHEGSPYTRREYSYSTARPWRADDILANPPR
LPDRQPYPGVPHHHSSYVHLPPARPTSSLAHTHQDFQPVLHLVALNTPLSGGMRGIRGAD
FQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSLFSGS
QGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTEATGATGQAS
SLLSGRLLEQKAASCHNSYIVLCIENSFMTSFSK
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagatgcctctgcctgctgctgttgctgctctcctgccgcctt
gtgcctgccagcgctgatgggaattccctgagtcccctgaatcccctggtgtggctctgg
ccgcccaagacctctgattctttggaaggcccggtctcgaaaccccagaacagttcacct
gtgcagtccacagagaaccccaccacgcacgtggtcccccaggatggcctcacagaacaa
cagacgactcctgccagctccgagctgcccccggaggaagaggaggaggaggaggatcgg
aaagctggccagggtggcagccctgcaacccctgctgtccccattcccctggtgccccct
gctgcgagcccagacacgaaggaggagaatgttgcgggcgttggagccaagattctgaat
gtggctcagggcattcggagcttcgtccagctgtgggatgaggactcaactattgggcac
tctactgggactggggttccagattcctcaatccctacagtcctcccctctcctgccgag
ctctccagtgctccccaggggagtaagaccactctctggctaagcagtgccattccaagt
tctccagatgctcagacaactgaggctggcacgctggctgtgcccacccagatgcctccc
ttccagagcaacctccaggcaccactgggaagaccctcagtcccaccagacttcccaggt
agagcatttctctcttctccacggatcagggctcctccctgggggaaccaagagcctccc
aggcagccccagcatctggaggggaaaggactcttgcctatgacagccaggtccagccag
cagcacagacactctgatgtccactctgacatccacgggcacgtacctcttcttcccttg
gtgacgggtcctctggtgacggcttctctgagtgtgcacggtttactctctgttccttcc
tctgacccttccggccagctctctcaggtagcagctttacctgggttccctggtacttgg
gtttcgcacgtggctccttcttcagggactgggctttctaatgactctgcactggcggga
aatggctctctgacctctaccagccgctgcctgcccctgccacccactctgactctctgc
agccgtttaggtataggacacttttggctgcctaatcatcttcaccatacagacagtgtg
gaggtagaggccaccgtgcaggcttgggggcgcttcctccatacaaactgccaccccttc
cttgcctggttcttctgtctgctgctggctccttcctgtggcccaggcccaccacccccc
ttgccaccctgccggcagttctgtgaggccttggaggacgaatgttggaactacctagct
ggggacaggctgcccgtcgtctgtgcctctctcccttctcaggaggacgggtactgtgtg
ttcattgggccagctgcagagaatgttgctgaggaggtggggctgctgcagctccttgga
gaccccctacctgagaagatctcacaaatcgatgaccctcacgtcgggccggcctacatc
tttggaccagactccaacagtggccaggtggcccagtatcacttcccgaaactcttcttc
cgggacttttcgctgctgtttcacgtccggccagccacagaggcagcaggggtgctgttt
gccatcacagatgctgcccaggcggtagtctcactaggcgtgaagatctcagaggtccga
gatggacagcaaaatatctcattgctctacacggagcctggggccagccagacccagaca
ggagccagcttccgcctacctgcatttgttgggcagtggacacactttgcgctcagcgtc
gacggaggctctgtggctctctacgtagactgtgaagaattccagagggtgccatttgct
cggtcctcacagggactggagctagagcgtggtgctggcctctttgtgggtcaggctgga
acagcagaccctgacaagttccaggggatgatctcagagctgaaggtacgcagaaccccc
cgggtgagccctgtgcactgtctggatgaagatgatgatgatgaagaccgggcatctgga
gattttggaagtggctttgaagaaagcagcaagtcacacaaggaggatacatctctacta
cctgggctccctcagccacctcctgtcacttccccacccctggctggaggcagcaccaca
gaagatcctagaacagaagaaacggaggaagacaccacggtagattctataggagctgag
acccttcctggcacagattcaagcggtgcatgggatgaggctatccagaaccccggaggt
ggcttgataaagggaggtatgaaaggacaaaagggagaaccgggtgcccagggcccacct
ggcccagctgggccccagggtcctgccggtccagtggtccagagccccaactcacaacct
gtccctggagcacaaggacccccgggacctcaggggccaccagggaaggatggcattcca
ggaagggatggtgaaccgggtgaccctggtgaagatgggagaccgggtgacactggacct
caaggctttccagggaccccaggagatgtgggccctaagggcgagaagggagatcctggt
gttgggccccgaggacctccagggcctccagggccaccaggaccctccttcagacaggac
aagctgaccttcattgacatggagggatccggtttcagtggagacatagagagccttaga
ggcccacgaggcttccctggccccccggggccccctggtgtcccaggactccctggtgag
ccaggacgctttggggtcaatggttcctatgcaccaggacctgcaggccttcctggtgta
cctgggaaggaaggaccccccggttttccaggtcccccgggacctccaggtcctccaggc
aaagagggcccaccaggagtggccggccagaaaggcagtgttggtgatgtgggcatccca
ggacccaaggggagcaaaggagaccttgggcccatcggtatgcctggcaagtctggcttg
gctggatcccctgggccagttggacctccaggacctccagggcctccagggccaccagga
ccaggatttgctgctggattcgatgatatggaaggctctggaattcccttctggacaaca
gcccgaagctctgatgggctgcagggacctcaggggtcgctgggactcaagggggatcct
ggagtggcaggcccacctggagccaagggagaagttggagcagacggagcccagggcatc
cctggtcccccaggaagagaaggtgcagctggacctccgggaccaaaaggagagaaaggg
atgccgggagaaaagggaaacccaggaaaagatggagtgggccgcccgggcctccctggc
cctccaggacctccagggcctgtgatctatgtgtcaaatgaggatagagcaatagtgagc
acaccaggacctgagggcaagccagggtacgcaggctttcctggacctgctggaccgaag
ggtgacctgggttccaaaggcgagcagggtcttccggggcccaagggtgagaagggagag
ccaggcactatctttagtcctgatggcagagctctgggccatccccagaagggagccaag
ggagagccaggctttcgaggacccccgggtccttatggacgacctgggcacaagggtgaa
attggcttccctggacggccgggtcgacctggaacgaatggcttaaagggagagaaagga
gagcctggagatgccagccttgggttcagcatgaggggattgcctggcccgcctgggcct
ccaggacccccaggtcctcctgggatgcccatctatgacagcaatgcatttgtggagtct
ggccgacctggactaccaggacagcagggtgtgcaggggccttcaggaccaaagggtgac
aaaggagaggtgggcccacctgggccaccagggcaattccccattgacctcttccacctg
gaagcggaaatgaagggggacaagggagaccgaggggatgctggacagaaaggagagagg
ggagaacctggggctcctggtggtggattcttcagctcaagtgtacctggcccacccggc
ccacctggataccctggaattccgggtccaaagggagagagcatccagggaccacctggc
cctcctggcccgcagggacctcctggcattggctatgagggtcgccagggtcccccggga
cctccgggacctcccggacctccctccttccctggccctcacagacagactgtcagtgtt
cctggtcctccgggcccacctggtcctccaggtcccccaggagccatgggtgcctctgct
gggcaggtgaggatctgggccacataccagaccatgctggacaagatccgggaggtgccg
gagggctggctcatctttgtggccgagagggaagagctctatgtccgcgttagaaatggc
ttccggaaggtgctgctggaggcccggacagccctccctcgaggcacgggcaatgaggtg
gctgctttgcagcccccattggtccagcttcacgagggcagtccgtatacccggagggag
tactcctattccacggcacgaccctggcgagcagatgacatcctggccaacccaccgcgc
ctgccagaccgccagccttaccccggagttccacatcaccacagttcctatgtgcacctg
ccgccagcccgccccacctcctcacttgctcatactcatcaggactttcagccagtgctc
cacctggtggcactgaacacccccttgtctggaggcatgcgtggtatccgtggagcagat
ttccagtgcttccagcaagcccgagccgtggggctgtcgggcaccttccgggctttcctg
tcctctaggctacaggatctctatagcatcgtgcgccgggctgaccgggggtctgtgccc
atcgttaacctgaaggacgaggtgctatctcccagctgggactccctgttttctggctcc
cagggtcaactgcaacccggggcccgcatcttttcttttgacggcagagatgtcctgaga
cacccagcctggccgcagaagagcgtatggcacggctcggaccccagtgggcggaggctg
atggagagttactgtgagacatggcggactgaagctactggggctacaggtcaggcctcc
tccctgctgtcaggcaggctcctggaacagaaagctgcgagctgccacaacagctacatc
gtcctgtgcattgagaatagcttcatgacctctttctccaaatag
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integrated database retrieval system
