Mus caroli (Ryukyu mouse): 110304000
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Entry
110304000 CDS
T05910
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110304000 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110304000 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110304000 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110304000 (Smarcc2)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110304000 (Smarcc2)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110304000 (Smarcc2)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110304000 (Smarcc2)
PBAF complex
110304000 (Smarcc2)
GBAF(ncBAF) complex
110304000 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
110304000
NCBI-ProteinID:
XP_021030905
Ensembl:
MGP_CAROLIEiJ_G0015938
UniProt:
A0A6P5QJV1
LinkDB
All DBs
Position
10:120819694..120851668
Genome browser
AA seq
1244 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIVKRHQGTISEDKSNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKPPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQSSASQQMLNFPEKGKEKP
ADMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPE
RIEESGTEEARPEGQAADEKKEPKEPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKE
SEKSDGDPIVDPEKDKEPTEGQEEVLKEVAEPEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQPPTLPPGSQPIPPTGAAGPPTVHGLAVP
PAAVASAPPGSGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGPHGPS
PFPNQPTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPAAPSVIPFGSLADSISINL
PPPPNLHGHHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQS
PAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtacatacaa
gcagaaccgccaaccaacaagtctctgtccagcctggtggtgcagttgctccagtttcag
gaagaggtttttggcaaacatgtcagcaacgcaccgcttactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggatccctctgccatattcttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccgtcacgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtacagaataattgcctgtcacgacct
aacattttcctctgcccagaaattgagcccaaactgctagggaaattaaaagacattgtt
aagagacaccagggaaccatctctgaggataagagcaatgcctcccatgttgtgtatcct
gtcccagggaacctagaagaagaggaatgggtacggccagtcatgaagagggataaacaa
gttcttctgcactggggctactatcctgacagctacgacacgtggatcccagctagtgaa
atcgaagcatctgtggaggacgctcccactcctgagaaaccgaggaaggtccatgcaaag
tggatccttgacaccgacacattcaacgagtggatgaatgaggaagactacgaagtcagt
gacgacaaaagcccagtctcccgcaggaagaagatctcagccaagacgctgacggatgag
gtaaacagcccagattcagacagacgagacaagaaggggggcaactataagaagaggaag
cgttctccctctccttcacccaccccagaggctaagaagaaaaacgctaagaaaggaccc
tcaacaccttataccaagtcaaagcgaggccacagagaagaggaacaagaagacctgaca
aaagacatggatgagccctctccagtcccaaacgtggaagaggtgacactccccaaaaca
gtcaacactaaaaaggactccgagtcagccccagtcaaaggcggcaccatgactgacctg
gatgaacaggacgatgaaagcatggagaccacgggcaaggacgaggatgagaacagcacg
ggcaacaaaggcgagcagacgaagaacccggacctgcacgaggacaatgtgactgagcag
acccaccacatcatcatccccagctacgccgcctggtttgactacaacagcgtccatgcc
attgaacggagggctcttcctgagttcttcaacggcaagaacaagtctaagactccagag
atctacctggcgtatcggaacttcatgattgacacttaccgactgaatccccaggagtat
ctaacatctactgcctgtcggcggaacttggcgggtgatgtctgtgctatcatgagggtc
catgccttcctggaacagtggggtcttattaactaccaggtagatgctgagagccgacca
accccaatggggcctccacccacctctcacttccatgtcttggcggacacaccatcaggg
ctggttcctcttcagccaaagcccccacagggccgccaggttgatgctgacaccaaggct
gggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagagctctgcttcccagcaaatgctgaacttccctgagaaaggcaaggagaaacca
gcagacatgcagaactttgggctgcgcacagacatgtacacaaagaagaacgtcccctcc
aagagcaaagctgcagcaagtgccactcgggaatggacggagcaggagacactgctgctc
ctggaggctttggaaatgtacaaggacgactggaacaaagtgtctgagcacgtgggaagc
cgcacgcaggacgagtgcatcttgcattttctccgccttcccattgaagacccatacctg
gaggactcggaggcttctctaggccctctggcctaccaacccatccccttcagtcagtca
ggcaaccctgttatgagcactgttgccttcctggcctctgtcgtcgatccccgagttgcc
tctgctgctgcgaagtcagccctagaagagttctcaaaaatgaaggaagaggtgcccaca
gctttggtggaagcccacgtgcgtaaggtggaagaagcggccaaagtcacaggcaaggcc
gacccagcctttggtctggagagtagcggcatcgcagggactgcctctgatgagcctgag
cgcattgaggaaagcgggactgaggaggcacggccagagggccaggcagcagatgagaag
aaggagcctaaggaaccacgggaaggagggggtgctgtggaggaagaagcaaaggaggaa
ataagtgaggtccccaagaaagatgaagagaaagggaaagaaggtgacagtgagaaggag
tctgagaagagtgacggggacccgatagttgatcctgagaaagacaaggaaccaacagaa
gggcaggaggaagtgctaaaggaagtggcggagccagagggggagaggaaaaccaaggtg
gagcgcgacattggtgaaggcaacctgtccacagctgcagccgcagccctggccgctgct
gcagtcaaggccaagcacttggctgcagttgaggagaggaagatcaagtctttggtggct
ctgctggtagagacccaaatgaagaaactagagatcaaactccgacattttgaggagctg
gagacaataatggaccgggagcgagaggcgctggaataccagaggcagcagctcctggcc
gaccggcaagccttccacatggagcagctgaagtatgcagagatgagggcccggcagcag
cacttccagcagatgcaccagcagcagcagcagcagccaccaaccttgcccccaggctcc
cagcccatacctcccaccggggctgctggaccacctacagtccatggtctagctgtgcct
ccagccgctgtggcctctgcccctcctggcagtggggcccctcctggaagcttgggccct
tctgaacagattgggcaggcagggacaactgcagggccacagcagccacaacaagctgga
gcccctcagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctca
ccgttccccaaccaaccaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
cctgctgctccatccgtcatcccattcggtagtctagctgactccattagtattaacctt
ccccctcctcctaacctgcatgggcatcaccaccatctcccgtttgccccgggcactatc
cccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgacc
accaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagc
cctgccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagac
ccaggcaccccgctgcctccagaccccacagctccgagcccaggcacagtcacccctgtg
ccacctccacagtga
DBGET
integrated database retrieval system
