Mus caroli (Ryukyu mouse): 110304670
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Entry
110304670 CDS
T05910
Symbol
Slc6a4
Name
(RefSeq) sodium-dependent serotonin transporter isoform X2
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04082
Neuroactive ligand signaling
mcal04721
Synaptic vesicle cycle
mcal04726
Serotonergic synapse
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
110304670 (Slc6a4)
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
110304670 (Slc6a4)
04721 Synaptic vesicle cycle
110304670 (Slc6a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mcal02000
]
110304670 (Slc6a4)
Transporters [BR:
mcal02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
110304670 (Slc6a4)
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
110304670
NCBI-ProteinID:
XP_021031804
Ensembl:
MGP_CAROLIEiJ_G0016768
UniProt:
A0A6P5QF84
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Position
11:71927076..71960836
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AA seq
507 aa
AA seq
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MAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIIAWA
LYYLISSFTDQLPWTSCKNSWNTGNCTNYFAQDNVTWTLHSTSPAEEFYLRHVLQIHQSK
GLQDLGTISWQLALCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVLLVRGATLP
GAWRGVAFYLKPNWQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALV
TSVVNCMTSFVSGFVIFTVLGYMAEMRNEDVSEVAKDAGPSLLFITYAEAIANMPASTFF
AIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWAKRREWFVLIVVITCILGSLLTLTS
GGAYVVTLLEEYATGPAVLTVALIEAVVVSWFYGITQFCSDVKEMLGFSPGWFWRICWVA
ISPLFLLFIICSFLMSPPQLRLFQYNYPHWSIILGYCIGTSSVICIPIYIIYRLISTPGT
LKERIIKSITPETPTEIPCGDIRMNAV
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggccatctttggggggatcccgctcttctacatggagctcgcgctgggccagtaccac
cgaaatgggtgcatttctatatggaggaagatctgcccgattttcaaaggcattggctat
gccatctgcatcattgccttttatatcgcctcctactataacaccatcatagcctgggca
ctctactacctcatctcctccttcacggaccagctgccctggaccagttgcaagaactct
tggaacactggcaactgcaccaactacttcgcccaggacaatgtcacctggacactccat
tccacgtcacctgctgaagagttttacttgcgccatgtcctgcagatccatcagtcaaag
ggactccaggacctggggaccatcagctggcagctggctctctgcatcatgctcatcttc
accattatctacttcagcatctggaaaggagtcaaaacatctggcaaggtggtgtgggtg
acagccaccttcccttacattgtcctttctgttctgctggtgaggggagccacccttcct
ggagcctggagaggggttgccttttacttgaaacccaactggcagaaactcttggagaca
ggggtgtgggttgatgctgcagctcagatcttcttctctcttggcccggggtttggggtt
ctcctggcttttgctagctacaacaaattcaataacaactgttaccaagatgccctggtg
accagtgtggtgaactgcatgacgagcttcgtctctggctttgtcatcttcacggtgctt
ggctacatggctgagatgaggaatgaagacgtgtccgaggtggccaaagatgcgggcccc
agcctccttttcatcacatatgcggaggcaatagctaacatgccagcatccacattcttt
gccatcatcttcttcctcatgttaatcacgctgggtttggatagcacgttcgcaggtctg
gaaggtgtgatcacagctgtgttggatgagtttcctcacatctgggctaagcgcagggaa
tggtttgtgctcatcgtggtcatcacttgcatcttgggatccctgctcacactgacatca
ggaggggcgtatgtggtgaccctgctggaggagtacgccacggggccagcagtgctcact
gtggctctcatcgaggccgtcgtcgtgtcttggttctatggaatcacccagttctgtagc
gacgtgaaggaaatgctgggcttcagccccggatggttttggaggatctgctgggtggcc
atcagccctctgtttctcctgttcatcatttgcagttttttgatgagcccaccccaactc
cggcttttccaatacaattatccccactggagtatcatcttgggctactgcataggaaca
tcgtctgtcatctgcatccctatatacatcatttatcggctgatcagcactccagggaca
cttaaggagcgcattattaaaagtatcactcctgaaacaccaacggaaattccgtgtggg
gacatccgcatgaatgctgtgtaa
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