Mus caroli (Ryukyu mouse): 110305095
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Entry
110305095 CDS
T05910
Symbol
Helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110305095 (Helz)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
110305095 (Helz)
3'-5' decay
Other 3'-5' decay factors
110305095 (Helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_16
Bac_DnaA
AAA_22
AAA_7
AAA_5
SRP54
Motif
Other DBs
NCBI-GeneID:
110305095
NCBI-ProteinID:
XP_021032539
Ensembl:
MGP_CAROLIEiJ_G0017337
UniProt:
A0A6P5QNM8
LinkDB
All DBs
Position
11:103460745..103600619
Genome browser
AA seq
1957 aa
AA seq
DB search
MEDRRAERSCEQACASLQRQDYDMALQHCTDALLSLGQYAMADFTGPCPVEVERIRIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGERAFRAVLCCMQLKGKLQLVSSILAKSLS
GESLNGMVTKDLTRLKTLLTETETATSNVLSGCHVEDLDEGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQSENKQLSGSYMETLI
EKWMSSLSPEKVLSECIEGVQVEHSPDLSVTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKRQLVTTAKRWDSSSKTIVDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSRFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTRVNAVYLLPVP
KEKPVQSQGTKEKVYEATIEEKTKDYVFLRISRECCEELSLRPDCDIQVELQFQLNRLPL
CEMHYALDRIKDNAVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAAKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKHRVVVVTLSTSQYLC
QLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHG
ITWEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNSSRQQQSPPKVKSLYHPQSD
HFQSDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPIPYGLGHHPPV
SLGQPQNQHAEKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQVDLESNPQNRSPE
SRPGVVYSNTKFPRKDNLNPRHINPPLPAPHAQYAIPSRHFHPLPQLPRPPFPISQPHTL
LNQQHNNLPEQPNQMAPQPNQVAPQPNQVAPQPNQVVQQQSHAPPQAPQPAPQLSPAFQA
GPTNAFFNNAVAHRPQSPAAEAVGPEQPPPPGLPDGHSPLRAITQPGPILASPLNNFVDE
SSPGLPIEEALDRVHGSVALETLRQQQARLQQWSEHHAYLSQGGIPYSHHHHPHLPHLPQ
TPIGLHQPPVRAEWKVAGRADDETETTFSRFQDLLRELSHRDQGDTGELAEMPPPQSRLL
QYRQVQPRSPPAAPSPPSSTDHSSHFANFNDSSRDIEVANSPAFPQRLPPQLFGSPFSLP
SEHLAPPPLKYLAPEGAWNFANLQQSHLIGPGFPCGLPPLPPRPPQNPFIHIQNHQHTVG
QEPFHPLSARTVSASSLPSLEEYEPRGPGRPLYQRRISASPAQPCVEEASTPQDSLAQGK
ESQGHSNPPAFNFPAPESWANTTSSAPYQNIPCNGSSRTSQPRELIAPPKTVKPPEDQLK
PESGEVSSSFNYSMLQHLGQFPPLMPNKQIAESANSSSQQSPAGSKPAMSYASALRAPPK
PRPPPEQAKKGSDPLSLFQELSLGSSPGSNGFYSYFK
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgaaaggtcatgtgaacaagcgtgcgcgtcactgcagaggcag
gactatgacatggccctccagcactgcacagacgccctgctctctcttggccagtacgcc
atggcagacttcacagggccgtgcccagtggaggttgagcgcatcagaatcgagagtctt
ctttacagaatcgcctcattcttgcagttgaaaaactacgggcaagctgatgaagattgt
aggcatgtgctgggggaaggactggccaagggagagcgtgccttccgggcagtgctgtgc
tgcatgcagctgaaagggaagctccagcttgtgtcctccatccttgccaagtcactgtca
ggggagtctctgaatgggatggtaacgaaagatttgacaagactaaagacacttctcaca
gaaacagagacagcaacgagtaatgtcctgtctggatgtcacgtagaagacttagatgaa
gggtcttgtaatggttggcatttccgcccaccgcccagggggatcaccagcagcgaggag
tacaccttgtgtaagaggtttttagagcaagggatctgtaggtacggtgcccagtgtact
tcagcacattcccaggaagagctagcagagtggcagaaaagatacgcctcccgactgatc
aaactgaagcagcaaagtgagaataaacaactctcaggcagctacatggagaccttgata
gagaagtggatgagttcactgtctcctgaaaaagtgcttagcgaatgcatagagggagtt
caggtggagcacagccctgacctgtcggtcaccgtcaacaccaaaaaatcccaccagacg
tggacctttgctctgacctgtaagcctgcaagaatgctgtatcgggtagccttgctttat
gacgctcatcgtcctcatttcagtatcattgccatatctgccggagatagtactacccag
gtgtcacaagaagtccccgagaactgccaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagtgttcgactttggactggagccagtactcatgcagagggtgatg
attgacgcggcttctacagaagatcttgaatacctgatgcatgcaaagcggcagctggta
accacagccaagcgctgggactcctcgtctaagactattgtagattttgaacctaacgaa
actactgacctggagaagagccttttgatcagataccaaatccctctttctgccgaccag
ctgtttacacagtccgtcttagacaagtccctgaccaagactaactatcagtcgcggctg
cacgacctgctttatattgaggagatagcccagtataaagaagtcagcaggttcaacctt
aaagtgcaattgcagattttagcaagcttcatgctcactggagtttctgggggtgcaaag
tatgctcagaacggacaactttttggtcgtttcaagctcactgaaaccctctctgaagac
actttggctggacggctggtgatgaccagggtcaatgctgtttatttattaccagtccct
aaggagaagcctgttcagtcccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagactatgtatttttaaggatatccagggaatgctgtgaggagcttagt
ctgcgacctgactgtgacatccaggttgagcttcagtttcagttgaaccgattacccctc
tgtgaaatgcattatgcactagacaggattaaggacaatgctgttttgtttccagacatc
agtatgactcctaccataccttggagtcccaacagacagtgggacgagcagttggatcct
cgactaaatgcaaaacagaaagaagctgttctggccatcaccactccactctccatccag
ttgcctcctgtcctcatcattggaccctacgggacaggcaaaaccttcactctggctcag
gccgccaagcacatactgcagcagcaggagaccagcaggattctcatttgcacccattct
aatagtgctgctgacctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtgtatttccggaatcgctgggtgaagactgtccaccca
gtcgtgcatcagtactgtttgatctcaagcacacactccacctttcagatgccccagaag
gaagatattcttaaacatcgagtggtggtggtcacactgagcacttcccagtacctctgc
cagctggacctggaacctgggttcttcacgcacgttctcttagatgaagctgcccaggcc
atggagtgtgagaccattatgcctctagccttagctactaaaaacacacggattgttttg
gctggtgatcacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtttcgttacttgatcgactctacgagcattaccctgctgagtttccatgcagg
atcctcctctgtgagaactatcgttcccatgaagctatcatcaactacacctctgagctt
ttctatgaggggaagctgatggccagtgggaagcagccggcgcacaaggacttctatcca
ctcacgttctttacggcccggggggaggacgttcaagagaagaacagcacggccttctac
aacaatgcagaggtatttgaagtggtggagcgtgtagaagagctacgacggaagtggcca
gtggcatggggaaagttagatgacggcagcatcggtgtggtgacgccatacgctgaccag
gtgtttagaatccgagctgagcttcggaagaagaggctctcggacgtgaatgtggaaagg
gtgctcaatgtccaaggaaagcagttcagagttctgtttcttagcacagtgcgtacacgc
cacacttgcaagcacaagcagacgccaattaaaaagaaagagcaacttctggaagactcc
accgaggacttagattatggttttctatccaactacaaacttctcaatacggccatcacc
agagcacagtccttggttgctgtggtgggtgaccctgttgctctgtgctctattggaagg
tgtagaaagttttgggagcggtttattgccttgtgtcatgaaaaccacagcttgcacggg
atcacgtgggaacagatcaaggcgcagttagaggctttagaactgaagaagacttatgtg
ttgaatccactggctcctgagttcatcccccgggctctacgactgcagcattcaggaaac
agcagccgacagcagcagtcaccacccaaggtgaaaagcctctatcatccccagagtgat
catttccagagtgatggaattgttcagcccaatccttccgtacttattggcaatcctatt
agagcatatactcctccgccccctcttggaccgcacccaaacttgggaaaatctccaagc
cccgttcagagaatagatcctcacactgggactagtattctttacgtacctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtgccatggacagggtaccagggtagg
tttgcagttgaccctcggattatcacacaccaggcagcaatggcctacaatatgaaccta
ttacacacgcatggacgtgggtcgccgatcccttatggtcttggccatcacccacctgtc
agcctaggccagccacagaatcagcatgcagagaaggatcagcaggagcaaaaccgaaat
ggtaaaactgatacaaataaccctggacctgaaattaataagatccgaacaccagagaag
aaacctacagagcccaagcaggttgatttggaatcaaatccacagaacagaagtcctgaa
tcccgtcctggtgttgtttattccaacactaaatttcctcgaaaagataatctcaaccca
agacacataaatcctcctctccctgcaccgcacgctcagtatgcaatccctagccgccat
tttcatccactgcctcagctgcccaggccgccgtttcccatttcccagccacacaccttg
ttaaatcagcaacataataatttgcctgaacaaccaaatcagatggcacctcagccaaat
caggtggcaccccagccaaatcaggtggcaccccagccaaatcaggtggtccagcagcag
agccatgcacctccacaggccccacagccagcacctcaactctctcctgcatttcaggca
gggcccaccaatgcatttttcaataatgcagttgctcaccgaccacagtctcctgctgca
gaggctgtgggtcctgagcagccgccccctcccgggctgcccgatggccacagtccactg
agagccatcacacagcctggccccatcctggcatcaccattgaacaacttcgttgatgag
agctctccaggattgcctatagaagaagctttggatcgagtgcatggaagtgtagctctg
gaaacgctgaggcagcagcaggcgcggctacagcagtggagtgagcaccacgcctacctg
agccagggcggcatcccctattcacaccatcaccatcctcacctcccgcatcttccccag
acacccattggcctccaccagccaccagtgagggcagagtggaaagtcgccggcagggct
gacgatgaaacagagacaacattctcaaggtttcaagacttactcagagagctgtcccat
cgggatcaaggtgacactggagaactagctgaaatgcctccgcctcagtcaagacttctg
cagtacagacaagttcagcctagaagtccgccagcggccccgtctcccccttcctccaca
gaccacagtagccactttgctaactttaatgacagcagcagagacatcgaagtagccaac
agcccagcattcccgcagcgcctcccgccgcagctctttggctcccctttctcgttgcca
tctgaacaccttgcccctcctcctctgaaatacctggctccggaaggagcatggaatttt
gctaacttgcagcagagtcacttaatagggccgggctttccctgtggcctccctccattg
cctcccaggccaccgcagaacccttttatacacatccagaaccatcagcacacggttggt
caagagccgtttcacccactgtcagctcgaacagtgtctgcttcttcgctccccagccta
gaagagtatgagcccagaggacctggtcggcccttgtaccaaagaagaatctcagctagc
ccagcccagccttgtgtggaagaggcaagcactccccaagacagcctggctcagggcaaa
gaatcgcagggccacagcaacccacctgccttcaacttcccggcccccgagtcctgggcc
aacaccacctcatctgccccctaccagaacattccgtgcaatggatccagcaggacgagt
cagcccagagagttgatagctccacccaagactgtcaaaccccctgaggatcagctgaag
cccgagagcggggaggtttccagttccttcaactactcgatgctgcagcaccttggccag
ttcccacccctcatgcccaacaagcagatcgcagagtctgccaacagcagcagccagcag
agcccggcagggagcaagcccgccatgtcctacgccagtgcgctgcgggccccgcccaag
cccaggccgccacccgagcaggccaagaagggcagcgacccgctgtccctgttccaggag
ctcagtctgggcagcagtccgggcagcaatggcttctactcctacttcaagtga
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integrated database retrieval system
