Mus caroli (Ryukyu mouse): 110305259
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Entry
110305259 CDS
T05910
Symbol
Cnot6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110305259 (Cnot6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110305259 (Cnot6)
Enzymes [BR:
mcal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110305259 (Cnot6)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110305259 (Cnot6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110305259 (Cnot6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_6
LRR_NXF1-5
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
110305259
NCBI-ProteinID:
XP_021032795
Ensembl:
MGP_CAROLIEiJ_G0016277
UniProt:
A0A6P5QV04
LinkDB
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Position
11:complement(44555954..44597002)
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AA seq
557 aa
AA seq
DB search
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMVSLRELHLNYNQLRVLPFELGKLF
QLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNLSGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPQVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagaaaagtacgagccccctgaccctcggaggatgtacacaattatgtcctct
gaggaagcagcaaatggaaagaaatcacattgggcagagcttgaaataagtggaaaagta
agaagcttaagctcatctttgtggtcacttactcacttgacagctttgcatctgagtgac
aattccctgtcctgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcccataatcaaatccagagtttaccggcagaactcggaaacatggtatcactcagg
gagctccatttaaattacaaccagttacgagttctaccttttgagctgggaaaactgttt
cagttgcagactttaagcctgaaaggaaatccgcttacccaggatatattgaacctctgt
ctggagccagatggaacaagaaggctactgaactacttgctcgataatttgtcaggtact
gcaaaaagaatttcaacagaacaaccacctccaagatcttggatcatgttacaagaacca
gacagaacaaggccaacagccttgttttctgtcatgtgctataatgttctttgtgataaa
tatgcgacccggcagttatacggctactgtccatcatgggcactaaattgggactacagg
aaaaaggccattattcaagaaattttgagctgcaatgctgatattataagtcttcaggaa
gttgaaacagagcagtattacagtttttttctggtagaactgaaagaacgtggctataat
ggattctttagtccaaagtctcgagctcggactatgtctgaacaagaacggaagcatgtt
gatggctgtgcaatattcttcaagacggaaaaattcactttggttcagaaacacacagtt
gaatttaatcagctagcaatggcgaattcagaagggtctgaagccatgttgaacagagtc
atgacaaaggataacattggagttgcagtactgctagaacttcgaaaggaattgattgaa
atgtcatctggaaaaccacatctgggaacagaaaaacaacttattctcgtggctaatgct
catatgcattgggaccctgagtactcagacgtgaagttggtacaaactatgatgttcctc
tcagaagtgaagaatattattgataaagcctctcggagcctcaagtccagcgtattggga
gaatgtggaactattcctcttgtgttatgtgcagatctgaattctttgccagactctggt
gttgttgagtatctgagcaccggtggggtggaaacaaatcataaagacttcaaggaactg
aggtacaatgaaagtctcacaaacttcagctgcaatgggaagaatgggatgaccaatgga
aggatcactcatggtttcaagttaaagagtgcctatgagaatggcctgatgccttacacc
aattatacatttgatttcaagggtataattgactacatcttctattctaaacctcagctg
aatactttagccatcctgggacctctggatcaccattggctagtcgagaataacatcagc
ggctgcccacatccacttattccctctgaccacttctcactttttgcacaattggagctc
ttactgcctttcctgccccaagttaatggcattcaccttcctggcaggaggtag
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