Mus caroli (Ryukyu mouse): 110305398
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Entry
110305398 CDS
T05910
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03030
DNA replication
mcal03420
Nucleotide excision repair
mcal03430
Mismatch repair
mcal03440
Homologous recombination
mcal03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110305398 (Rpa1)
03420 Nucleotide excision repair
110305398 (Rpa1)
03430 Mismatch repair
110305398 (Rpa1)
03440 Homologous recombination
110305398 (Rpa1)
03460 Fanconi anemia pathway
110305398 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110305398 (Rpa1)
03032 DNA replication proteins [BR:
mcal03032
]
110305398 (Rpa1)
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110305398 (Rpa1)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110305398 (Rpa1)
DNA replication proteins [BR:
mcal03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
110305398 (Rpa1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
110305398 (Rpa1)
MMR (mismatch excision repair)
110305398 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
110305398 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
110305398
NCBI-ProteinID:
XP_021033014
Ensembl:
MGP_CAROLIEiJ_G0016734
UniProt:
A0A6P5QPR2
LinkDB
All DBs
Position
11:complement(70228961..70277154)
Genome browser
AA seq
617 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPVLQVINIRPISTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNTLVEGGQLASNCVCQVHRFIVNTLKDGRRVVILMDLEVKKSAEDVGLKIGNPVPYNE
GHGQQQQQQAVPSPASAATPPASKPQPQNGSLGMGSTAAKAYGASKPFGKPAGTGLLQPS
SGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATA
FNEQVDKFFPIIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPT
VQFDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKANNREVAKRNIYLMDMSGKVVT
TTLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDS
EGQTLDGVSISDHRSGGAGGSNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCM
YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAE
AILGQNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPV
DFRDYGRRLIANIRKNM
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccatcgcggccataatgcagcagggagatacatcc
ataaagcctgtccttcaggtcattaacatccgtcctatttctacggggaatagtccaccc
cggtatcgactgctcatgagtgatgggttgaacacgctttcctcgttcatgctggccacg
cagctgaacaccctggtcgagggtgggcagctggccagcaactgtgtctgccaggtccac
cggttcatcgtcaacaccctgaaagacggcaggagagtagtcatcttgatggacttggaa
gttaagaagtctgctgaagacgttggattaaagattgggaatcccgtgccctataatgaa
ggacatgggcagcagcagcagcagcaagcagtcccttccccagcctctgcagcgacacca
ccagccagcaagccccagccacagaatgggagtctgggaatgggttccactgcagctaag
gcttatggtgcctcaaagccatttggaaaacctgccggaactggcctgctgcagccttca
agtgggacacagtccaaagtggtgcccatcgccagcctcaccccgtaccagtccaagtgg
actatttgtgcccgtgtcaccaacaaaagtcagatccgcacctggagtaattcccggggg
gaaggaaagcttttctctctagaacttgtggatgaaagcggtgaaatcagagctactgct
ttcaatgagcaggtggacaagttctttcccattattgaagtgaacaaggtgtattacttc
tcaaagggcaccctgaagattgctaacaaacagttctcagctgttaaaaatgactatgag
atgaccttcaataatgagacttctgtccttccctgtgaagatggccatcacttacccaca
gttcagtttgatttcacagggatcggtgacctagagagcaaggctaaagatgcactagta
gacatcattggaatctgcaagagctatgaagattcaattaaaatcacagtgaaggcgaac
aacagagaagttgctaagagaaatatctatttgatggacatgtcagggaaggtggtgacc
acaacgctgtggggagaagatgctgacaagtttgacggctctcggcagcccgtgatggcc
atcaaaggagcccgagtctctgacttcggtggacggagcctctcggtcctctcatccagc
actgtcattgtgaatcctgacatcccagaggcctataagcttcgtggctggtttgactca
gaaggacagaccttagatggtgtctccatctctgaccacaggagtggaggggccggaggg
agcaacaccaactggaaaactttgcatgaggctaaatccgagaacctgggccagggagac
aaggcggactatttcagcactgtggcagcggtggtgtttcttcgcaaagagaactgtatg
taccaggcctgcccaacccaggactgcaataagaaagtgattgaccagcagaatgggttg
taccgctgtgagaagtgtgaccgggaatttcccaatttcaaataccgcatgatcttatcg
gcaaatattgcagattttcaggagaaccagtgggtgacgtgtttccaggagtctgcagag
gccatccttggacagaacactatgtaccttggggaactcaaagagaagaacgagcaggcg
tttgaggaggttttccagaatgccaacttccggtcatttacgttcaggatcagggtcaag
ctggagacctacaatgatgaatctcgaattaaggccactgtgatggacgtgaagcccgtg
gacttcagagactatggcagacggctgatcgcgaacatcaggaagaacatgtga
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integrated database retrieval system
