Mus caroli (Ryukyu mouse): 110305476
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Entry
110305476 CDS
T05910
Symbol
Brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03440
Homologous recombination
mcal03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110305476 (Brip1)
03460 Fanconi anemia pathway
110305476 (Brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110305476 (Brip1)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110305476 (Brip1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
110305476 (Brip1)
FA (Fanconi anemia) pathway
Downstream FA components
110305476 (Brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
DUF1866
HBB
Motif
Other DBs
NCBI-GeneID:
110305476
NCBI-ProteinID:
XP_021033128
Ensembl:
MGP_CAROLIEiJ_G0016911
UniProt:
A0A6P5QIB6
LinkDB
All DBs
Position
11:complement(81272077..81403687)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSSVSSEYTISGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSA
LAWQQSLSEKPVDEGLNKKPEAPPSCSCACHSKNFTYSDTNLDTSPHFSSPSKPSSRRNG
VSSPCQDSPEKNTLAAKLSAKKQASIHRDEDDDFQVEKKRIRPLETTQQIRKRHCLEKDV
HHVDARLASEKRVKPESPIGKSFSDRKDSFQNVDGLCSRCCCSAKQGNNEESANTVKKDH
GGQCKRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNFNRKEK
CMELLDGKHGKSCYFYHGVHKISSQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARE
LIDDADIVFCPYNYLLDAQIRETMDIKLKGQVVILDEAHNIEDCARESASYSVTEVQLRF
ARDELDSLINSNIRKKSHEPLRDVCYNLINWLETNSKHLVERDYESSCKIWSGNEMLLNL
YRMGITTATFPVLQRHLSAVLQKEEKATSVHGKEEAIQIPIISASTQVVLKGLFMVLDYL
FRENSRFADDYKVAIQQTYSWTNQIAIFDKTGVLAVPKNKKHSRQKIGVNAVNFWCLNPA
VAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFSIQLEANHVISNSQVWVGTVGSGPKG
RNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRERWIFTGLWHSL
ESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSEGLDFSDDNAR
AVITVGIPFPNVKDLQVELKRQYNDHHSKSRGLLPGRQWYEIQAYRALNQALGRCIRHKN
DWGALILVDDRFNNNPNRYISGLSKWVRQQIQHHSSFASALESLTEFSRRHQKVTNRSKK
DEKCTKDNEPTLEVSCLEDSTFTSVSESSHQSPENSTEEAEVCIQELQCPQMTTKNPSIP
SHGTSRRKKSDPGLRGESLQTMKTEKNEISRSSSPTFGKQTEPVNWPIFNSLRRHFNSKV
KNCTPVLKSSKNHAPGSSTFNKTALPLTGKCVPSNETADTSLGPCLQSEVTISPVKIKAT
PATNYSKQVFCCEKDLLPDTELSPGTEEAKCSSSNKAAETEVDDDSECFTPELFDPVDTN
EENGELVETDRSSHSSDCFSAEELFETATGFGQK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtgtcgtctgaatacaccatcagtggggtgaagatccactttccctgtaga
gcctatccagcacagcttgcgatgatgaattctattgtcagaggactaaacagcagccaa
cactgtttgctggagagtcccacaggaagtggaaaaagtttagccttactttgttctgca
ttagcatggcagcaatctcttagtgagaagccagtggatgagggcctgaataaaaagcct
gaggcaccaccttcatgttcgtgtgcatgccattcaaagaattttacctacagcgacaca
aacctggacacttcacctcatttcagtagtccaagcaaaccatcttctagaagaaatgga
gtctcatcaccctgtcaagactctcctgaaaaaaatactctggctgcaaagttatctgcc
aagaaacaggcatctatacacagagatgaagatgatgattttcaggtagagaagaaaaga
atccgacccttagaaactacacagcagataagaaaacgtcattgtttggaaaaggacgtc
caccatgtagatgcacgactagcttcagaaaagagagtaaagcctgagtctccgatagga
aagtctttctccgacaggaaagactcttttcaaaatgtggatggcctttgttccaggtgc
tgctgttctgctaaacaaggaaacaacgaagagtctgcaaatactgttaagaaagatcac
gggggacaatgcaagagacctaaaatttattttgggacacggacacacaagcagattgct
cagattaccagggagctccgtaagacagcttactcaggggtcccgatgactattctttcc
agcagggatcacacctgtgtccatcctgaagtggtgggaaacttcaacagaaaggaaaag
tgcatggagctgctggatggcaaacatgggaagtcctgctatttctatcatggtgttcat
aaaattagtagccagcagacactgcagcatcttcaggggatgtccagagcctgggacata
gaagaacttgtcagcctcgggaggaaactgaaagcttgtccctactatacagctcgagag
ctgatagatgatgctgacatagttttttgtccctacaactaccttttagacgcacaaata
agggaaactatggatataaagctgaaaggacaagttgtcattttagatgaagctcacaac
attgaagactgtgctcgggaatcagcaagctacagtgtaacagaagttcagcttaggttt
gctcgggatgagctagatagtttgatcaacagtaatataaggaagaaaagccacgagccc
ctacgagatgtgtgctataacctcatcaattggttagaaacaaattctaagcatcttgta
gaaagggattatgagtcgtcttgtaaaatatggagtggaaatgagatgctcttaaactta
tacaggatgggcatcaccactgctacttttccagttttgcagaggcatctctcagctgtt
cttcaaaaagaagagaaagccacatcagtccatggtaaagaggaggcaatacaaatccct
attattagtgcatcaactcaagtcgtgctcaaaggactctttatggtgcttgactatctc
tttagagaaaatagcagatttgcagatgattataaagttgctattcaacagacttactcc
tggacaaatcagattgctatttttgataaaactggagtcttggctgtaccaaaaaataag
aaacattcacgacagaaaattggagttaatgcagtaaacttttggtgcttaaatccagct
gtggccttttcagatattaatgacaaagtacggaccattgttctaacatcaggaacactc
tcacccctgaaatccttttcatctgagcttggcgtcacatttagcatccaactggaggct
aaccatgtcatcagtaactcacaggtttgggttggtactgttggctcaggccctaagggt
cggaatctctgcgctacctttcagcatactgaaacatttgagttccaggatgaagtggga
atgcttctgttatctgtgtgccagactgtgagccaaggaattctgtgctttttgccatct
tacaagctattagagaaattaagagaacgttggattttcactggcctatggcatagtttg
gagtcagtgaagacagtcattgcagaaccccaaggaggagaaaaaactgattttgatgaa
ttgctgcaagtgtactatgacgccatcaagttcaaaggagaaaaggatggagcccttctc
atagcagtttgtcgcggcaaggtgagcgagggtctggatttctcagatgataacgcccgt
gctgtcataaccgtagggattcctttcccaaatgtgaaggatcttcaggtggagctaaaa
cgacaatacaatgaccaccactcaaaatcgagaggccttctgcctggccgtcagtggtat
gaaattcaagcataccgagccttgaatcaggctctaggcagatgtattcggcacaaaaat
gattggggagctcttattctagtggacgatcgcttcaataacaatccaaaccgctatata
tcaggactttctaaatgggtgaggcagcagattcagcaccattcaagctttgcaagtgcc
ctggagtcgctgacggagttctccagaagacaccagaaagttactaatagatccaaaaaa
gacgaaaaatgtacaaaagacaatgagcctaccctggaagtgtcctgtttggaggatagc
acttttacaagtgtgtcagaatcaagtcatcagtcaccagaaaactcgacagaagaagca
gaagtgtgtatccaggagctgcagtgtccccagatgactactaaaaacccctcaatacca
agtcacggcacttccagaaggaagaaaagtgatccaggactaagaggagagtctcttcag
acaatgaaaacagaaaaaaatgagatttcccgatcttcaagcccaactttcggaaagcaa
acagagccagtcaactggcctatctttaattctctaagacggcatttcaatagtaaagta
aaaaattgcacaccagtactcaagtcatcaaagaaccatgcccctggttcttccactttc
aataaaactgctttgccactcacaggtaaatgtgtgccctcaaacgaaacagcagacaca
tcactgggaccttgccttcagtcagaagtcacaatttcaccagtgaagattaaagctact
cctgctacaaattattccaaacaggtgttctgctgtgagaaagacctactcccggatact
gaattgtctccaggaactgaagaagccaagtgttccagctcaaacaaagctgctgaaaca
gaagtggatgacgactctgagtgttttacacctgaactttttgatcctgtcgataccaac
gaagaaaacggtgaactggttgaaactgatagatcaagtcatagttcagattgtttttca
gcggaagagctttttgaaactgcaactggatttgggcagaagtga
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integrated database retrieval system
