Mus caroli (Ryukyu mouse): 110305547
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Entry
110305547 CDS
T05910
Symbol
Rai1
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110305547 (Rai1)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
110305547 (Rai1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
110305547
NCBI-ProteinID:
XP_021033222
Ensembl:
MGP_CAROLIEiJ_G0016450
UniProt:
A0A6P5QVW4
LinkDB
All DBs
Position
11:54933261..55026330
Genome browser
AA seq
1889 aa
AA seq
DB search
MQSFRERCGFHGKQQNYPQTSQETSRLENYRQPGQAGLSCDRQRLLAKDYYSPQPYTGYE
GGTGTPSGTVATAAADKYHRGSKSLQGRPAFPSYVQDSSPYPGRYSAEEGLQTWGGPQPP
PPQPQPLPGAVSKYEENLMKKTVVPPPNRQYPEQGPQLPFRTHSLHVPPPQPQQPLAYPK
LQRQKPQNDLASPLPFPQGSHFPQHSQSFPTSSTYAPTVQGGGQGAHSYKSCTAPSAQPH
DRPMSANASLAPGQRVQNLHAYQPGRLGYEQQQQALQGRHHTQETLHYQNLAKYQHYGQQ
GQGYCPPDTAVRTPEQYYQTFSPSSSHSPARSVGRSPSYSSTPSPLMPNLENFPYSQQPL
STGAFPTGITDHSHFMPLLNPSPTDAASSVDPQAGNCKPLQKEKLPDNLLSDLSLQSLTA
LTSQVENISNTVQQLLLSKATMPQKKGVKSLVSRTPEQHKSQHCSPEGSGYSAEPAGTPL
SEPPSSTPQSTHAEPQDTDYLSGSEDPLERSFLYCSQARGSPARVNSNSKAKPESVSTCS
VTSPDDMSTKSDDSFQSLHSTLPLDSFSKFVAGERDCPRLLLSALAQEDLASEILGLQEA
IVEKADKAWAEASSLPKDNGKPPFSLENHGTCLDTVAKTSWSQPGEPETLPEPLQLDKGG
STKDFSPGLFEDPSVAFATTDPKKTSSPLSFGTKPLLGTATPDPTTAAFDCFPDTPTASS
VDGANPFAWPEENLGDACPRWGLHPGELTKGLEQGAKASDSVGKADAHEASACMGFQEDH
AIGKPAAALSGDFKQQEAEGVKEEVGGLLQCPEVAKADQWLEESRHCCSSTDFGDLPLLP
PPGRKEDLEAEEEYSSLCELLGSPEQRPSLQDPLSPKAPLMCTKEEAEEALDTKVGWVSP
CHLSGEPAVLLGPSVGAQSKVQSWFESSLSHMKPGEEGPEMERAPGSSGTSQGSLAPKPN
KPAVPEGPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRVPALPKDLLLPESCTGPPQGQ
AEGAGAPGRGLSEGLPRMCTRSLTALSEPQTPGPPGLTTTPTPPDKLGGKQRAAFKSGKR
VGKPSPKAASSPSNPAALPVASDSSPVGSKTKEPDSPSMPGKDQRSMVLRSRTKPQQVFH
AKRRRPSESRIPDCRATKKLPANNHLPTAFKVSSGPQKEGRMSQRVKVPKPGTGSKLSDR
PLHTLKRKSSFMAPVPTKKRSLILRSNNGSGGDGREERAESSPGLLRRMASPQRARPRGS
GEPPPPPPLEPPAACMGLSTQSSLPSAVRTKVLPPRKGRGLKLEAIVQKITSPGLKKLAC
RVAGAPPGTPRSPALPERRPGGSPAGAEEGLGGMGQMLPAASGADPLCRNPASRSLKGKL
LNSKKLSSAADCPKVEAFMSPETLPSLGTARAPKKRSRKGRTGALGPSKGPLEKRPCPGQ
PLLLAPHDRASSTQGGGEDNSSGGGKKPKTEELGPASQPPEGRPCQPQTRAQKQPGQASY
SSYSKRKRLSRGRGKTAHASPCKGRATRRRQQQVLPLDPAEPEIRLKYISSCKRLRADSR
TPAFSPFVRVEKRDAYTTICTVVNSPGDEPKPHWKPSSSAASSSTSSSSLEPAGASLTTF
PGGSVLQQRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPEHCL
PKKKPKLKEKARLEGTLEEASLPLERTLKGLECSASTTAAAPTTATITTPTALGRLSRPD
GPADPAKQGPLRTSARGLSRRLQSCYCCDGQGDGGEEVAPADKSRKHECSKEAPTEPGGD
TQEHWVHEACAVWTSGVYLVAGKLFGLQEAMKVAVDMPCTSCHEPGATISCSYKGCIHTY
HYPCANDTGCTFIEENFTLKCPKHKRLPL
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttttcgagaaaggtgtggtttccatggcaaacagcaaaactacccacagacc
tcccaggagacatcgcgcctggagaactacaggcagccgggtcaggctgggctaagctgt
gatcggcagaggctgctggccaaggactactacagccctcagccctatacaggctatgag
ggtggcactggtacaccttctggcacggtggccacggcagctgcagacaagtaccaccga
ggcagcaaatccctgcaggggaggccagctttccccagctatgttcaagacagcagcccc
tacccagggcgctactctgccgaggaaggtcttcagacctgggggggccctcagccaccg
cctcctcagccacagcctctgcccggggcagtgagcaagtatgaggagaacctgatgaag
aagacagttgtgcctcctccaaacaggcagtaccctgagcagggcccccagcttcccttc
cggactcacagcctgcatgtcccaccaccacagcctcagcagcccctggcttaccccaaa
ctccaaaggcagaaaccacagaacgaccttgcctcccctctgcccttcccccagggcagc
cactttccccagcattcccagtccttccctacctcctccacttatgccccaacagtgcag
ggtggtgggcagggggcccactcctacaagagctgcacagcaccatctgcccagcctcat
gataggccgatgagtgccaatgcgagcctggctccagggcaacgggtccagaatcttcac
gcttaccagcctggccgccttggctacgagcaacagcagcaagcacttcaaggccggcac
cacacccaggaaacactccactaccagaacctcgccaagtaccaacactatggacagcaa
ggccagggctactgtcccccggacacagctgtcaggactccagagcagtattaccagacg
ttcagcccgagctccagccactcccctgcacggtctgtgggtcgctccccttcctatagc
tccaccccgtcaccactgatgcccaatctggagaacttcccctatagccagcagccgctt
agtactggggccttccccacaggcatcacagaccacagccactttatgcccctgcttaac
ccgtccccaacagatgctgccagctctgtggacccccaggcaggcaactgcaagcccctg
cagaaggaaaagctccctgacaacttgctctcagacctcagcctgcagagcctcacagcg
ctcacctcccaggtggaaaacatctccaacaccgtgcagcagctcttgctgtccaaagct
accatgccacagaagaaaggggtcaagagccttgtgtccaggactccagagcagcacaaa
agccagcactgtagccctgagggcagcggctactcagctgagccagcgggcacaccactg
tctgagccgccgagcagcacgccacagtccacccatgctgagccacaggacactgactac
ctgagtggctccgaggacccgctagaacgcagcttcctctactgcagccaggcccggggc
agccccgccagggtcaacagcaactccaaggctaagcctgagtctgtgtccacctgttct
gtgacctcacctgatgacatgtccaccaagtccgacgactctttccagagcctgcacagt
actctgcccctggacagcttctccaaatttgtcgcaggcgagcgggactgcccgcgcctg
ctgctcagtgccctggcacaggaagatctggcctccgagatcctgggactgcaggaagcc
attgttgagaaggctgacaaggcctgggctgaggcttccagcctgcccaaggacaatggc
aagccacccttctcactggagaaccatggcacctgcctggacactgtggcaaagacttca
tggtcacagccaggggagccggagaccctccctgagcccttgcagctggacaagggtggc
agcaccaaggacttcagcccggggctgtttgaagacccctctgtggcctttgccaccact
gacccgaagaaaacaagcagtcccctgtccttcggcaccaagcctttgctagggactgcc
actcctgaccccaccacagcagcatttgactgctttccagatacacccactgccagctcg
gtggatggtgccaacccctttgcctggccagaggagaacctgggcgatgcttgtcctcgt
tggggcctccaccctggtgagcttaccaagggcttggaacagggtgcaaaagcctcagac
agcgtgggcaaggcagatgcacacgaggcctctgcttgcatgggcttccaggaggatcat
gccatcgggaagccggcagccgcactgtccggggacttcaaacagcaggaggcagagggg
gtgaaagaggaggtgggtgggttgctgcagtgccccgaggtggccaaggccgaccagtgg
ctggaggagagccgccattgctgttcttccactgactttggggacctgccactgttgccg
ccccctggcaggaaggaggacctggaagctgaagaggagtactcttctctgtgtgaactg
ctggggagccctgagcagaggcccagcctgcaggacccgctgtccccaaaggccccgctg
atgtgcaccaaggaggaggcagaggaggcgctggacaccaaggttggctgggtctctccg
tgtcacctctccggggagcctgctgtcctactgggcccctctgtgggtgcccaatcaaag
gttcagagctggtttgaatcttctctgtcacacatgaagccgggagaagaagggccggag
atggagagggctccaggtagttccggcacctcacaaggctccttggccccgaagcctaac
aagcctgccgtacctgaggggcccattgctaagaaagagcctgtgccacggggtaagagc
ttacggagccggcgagtacaccgggggctgcctgaggctgaagactctccgtgcagggtg
ccagcacttcccaaagacctcttgctcccagagtcttgcacggggcccccacagggacag
gccgagggggctggagccccaggccgggggctgtcagaagggctccccagaatgtgtacc
cgctcgcttacagctctgagtgagccccaaactcctggacctccgggcctgactaccacc
cctacgcctcccgacaaactgggaggtaagcagcgagctgccttcaagtctggcaagcgg
gtcggaaaaccatcacccaaggctgcatccagccccagcaaccctgctgccctgcctgtt
gcctcagacagcagccccgtgggctccaagaccaaggagccagactctcccagcatgcct
ggcaaggaccagcgctccatggtcctccggtctcgcaccaaaccccagcaggtcttccat
gccaaacggcggcggccctcggagagccggatcccagactgtcgtgccaccaagaagctc
cctgctaacaaccatttacccactgcgttcaaggtctccagtgggccccagaaggaaggt
cggatgagccagcgggtcaaagtacccaagcctggtacaggaagcaagctttcagatcgg
cctctccacacgctcaagaggaagtcgtctttcatggcacctgtccccaccaaaaaacgg
agcctcatcctgagaagcaacaatggaagtgggggagatgggagggaggagagggctgag
agttcccctggcctcttacggaggatggcctcaccccagagggccagacccaggggtagt
ggggagccacccccacccccacccttggagccacctgctgcatgcatggggttgtctaca
cagtcatccctgcccagtgctgtgaggaccaaggtgctgccaccgcgaaagggccgcggc
ctcaagctggaggccatagtgcagaagatcacctcacctggtctcaagaaactcgcatgc
agagtggcgggagcccctcctgggacaccccggagcccagccctgcctgagagacgtcca
gggggcagtccagccggggcggaagagggtttaggaggaatggggcaaatgctaccagca
gcttccggagctgacccattgtgcaggaacccagccagcaggtccctaaaaggtaaactc
ttgaacagtaagaagctgtcctctgctgctgactgccccaaagttgaggccttcatgtcc
ccggagaccctgccatcactagggactgcccgggcaccgaagaaaaggagccggaaaggc
aggactggggccttgggaccctccaaaggtccgttggagaagcggccgtgtccgggccag
cctctgctcctcgctccccacgacagggccagcagcactcagggcggaggtgaggacaac
tccagtggaggaggcaagaagccaaagacagaggagctgggaccggcctcccagcccccc
gaaggccggccctgccagccccagacgagggcgcagaagcagccgggccaagccagctac
agcagctattccaagcggaagcgcctcagccgcggccgggggaagaccgcccacgcttca
ccctgtaagggacgtgccactcggagaaggcagcagcaggtactgcccctggatcctgca
gagcctgaaatccgactcaaatacatttcctcttgcaaaaggctgcgggcagacagccgc
accccagccttctcaccttttgtgcgggtggagaagcgagatgcgtacaccaccatatgc
actgtcgtcaactccccaggggatgagccgaaacctcactggaagccatcctcctctgct
gcctcctcctccacctcttcctcctccttagaaccagctggggcttctctgaccacattc
cctggaggctctgtgctgcagcagaggccctccctgcccctctcctccaccatgcatctg
gggcctgtggtgtctaaggccctaagtacctcttgccttgtctgctgcctctgccaaaac
ccagccaatttcaaggaccttggggacctctgtggcccctactaccctgaacactgcctc
cccaaaaagaagccaaaactcaaggagaaggcgcggctggagggcaccttggaggaggcc
tctctgcctctcgagagaacactcaaaggcctggaatgttcagccagcaccactgctgcc
gcccctaccacagccactatcactacccccacggccctggggagactgtccaggcccgat
ggcccagctgaccctgccaagcaggggcccctgcgcaccagtgcccggggcctgtcacgg
cgactgcagagttgctattgctgtgatggtcagggggacgggggtgaggaggtggccccg
gctgacaagagccgcaaacatgaatgcagcaaagaggcccctacagaacctggtggggac
acccaggaacactgggtccatgaggcctgtgctgtgtggaccagcggggtgtacctggtg
gccgggaagctctttgggctgcaggaggccatgaaggtagctgtggacatgccgtgtacc
agctgtcacgagcccggggcgaccatctcgtgctcctataaaggatgtatccacacctac
cactacccatgtgccaatgacacaggttgcacgttcattgaggagaattttactttgaag
tgccccaaacataagaggctgcctttgtaa
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