Mus caroli (Ryukyu mouse): 110305635
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Entry
110305635 CDS
T05910
Symbol
Scarf1
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110305635 (Scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110305635 (Scarf1)
Membrane trafficking [BR:
mcal04131
]
Endocytosis
Phagocytosis
Scavenger receptors
110305635 (Scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
EGF_C8A_B_C6
Motif
Other DBs
NCBI-GeneID:
110305635
NCBI-ProteinID:
XP_021033337
Ensembl:
MGP_CAROLIEiJ_G0016742
UniProt:
A0A6P5QQJ9
LinkDB
All DBs
Position
11:70443212..70456231
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AA seq
815 aa
AA seq
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MLAAMGLELVFSLLLFWAQGTQGSTLDPAGQHVCKGSSPSELQCCPGWRQKDQECTIPIC
EGPDACRKEEVCVKPGLCRCKPGFFGAQCSSRCPGQYWGHDCRETCPCHPRGQCEPATGD
CQCQPNYWGRLCEFPCTCGPHGQCDPKTGLCHCDPGWWSPTCRRSCQCNPAARCDQATGA
CVCPPGWWGRRCSFSCNCHTSPCMQDSGRCVCLPGWWGPECSRKCQCVRGQCSVTSGHCS
CPPGFHGIRCELPCNPGHYGAQCKESCGHCEPNATCSPVTGNCESCKPGWNGTQCKQPCP
AGTFGERCTGQCPRCRLGEPCQAETGHCQHCDPGWLGHRCENPCPLGTFGKGCSSTCPAC
VQGTCDAVTGECVCSAGYWGTSCNSSCPSGFHGNNCSIPCQCPEGLCHPVSGTCQLGRHG
KNALIVGILVPLLLLLMGIVCCAYCCSGTRLDPKDRPERNGAAFFRMKQQVWGALTNLGS
ALPCGSLSNYKLPWVTVSHHDPEVPFNHSFIEPPSAGWASDDSFSSDPDSGEEDEAHAYS
VPPREGKVPMAQEESPEASLPGGSFPPPEDASTPFPIPRTSSLARAKRPSVSFAEGTKFA
PQNGRSSGDLSSPIRKPKRLSRGAQPHPEGQEAEESTGPEQVNTEEDALTAASSGDPATS
HGQLPPGSQTVAECAETTDGGIQDSSGSVATIYMLAGTPQKPEGPVWSVFRRLGNYQKDQ
AAPKVKSAIPKPLRRSLGRNQASTGSAPDAVLSGVMESTAVRPEETPRGLGDGIESSGTV
QEPDAGGSSQKQAEEKEQEEPLYENVVPMSVLPQH
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgccatgggactagagctggtgttctcactgttgctgttctgggctcagggg
acccagggatccacgctagacccagctggtcagcacgtctgtaaaggcagcagcccctct
gaactccagtgttgtcccggctggaggcagaaagatcaagaatgcaccatccccatctgt
gaggggcctgatgcctgcaggaaagaagaggtgtgcgtgaagccgggcctctgtcggtgt
aaacctggattcttcggagcccagtgcagctcccgctgtccaggacagtactggggccac
gactgtcgtgagacctgcccctgtcatccacgtggccagtgcgaaccggccacgggtgat
tgccaatgccagcccaactattggggcaggctctgtgagttcccctgcacctgcggcccc
cacggacagtgcgacccaaagacgggcttgtgccactgtgaccctggctggtggtcaccc
acgtgtcgtcgctcatgccagtgcaacccagccgcacgctgtgaccaggccactggagcc
tgtgtatgcccgccgggctggtggggccgtcgctgcagcttcagttgcaactgccacacc
tcgccctgcatgcaggactccggccgctgcgtctgcctgccgggctggtggggtccagag
tgcagtcgtaagtgccagtgtgtgcgaggccaatgcagcgttacttctggccactgttcc
tgccctcctggcttccatggaatccgctgtgagctgccttgcaaccctggccactatggg
gcgcagtgcaaagaaagctgtggccactgtgagccgaatgccacatgctctccagtcacc
ggcaactgtgagtcctgcaagccaggctggaacgggactcagtgcaagcagccatgtcct
gcaggcacctttggtgagaggtgcactgggcagtgcccccgctgccggcttggggagccc
tgtcaagcagaaactgggcactgccagcactgcgaccccggttggctggggcacaggtgt
gagaacccttgtccccttggtacctttggaaagggttgcagctctacctgccctgcctgt
gttcaggggacttgcgatgcggtgactggggaatgtgtctgcagtgctggctactggggg
accagctgcaacagttcctgcccatctggcttccatggaaacaactgctctatcccctgc
caatgcccagaggggctctgccaccctgtgtctgggacctgccagctgggccgtcatggt
aagaacgccctcattgtgggcatcctggtacctctgctgctgctcctcatgggcattgtc
tgctgtgcctactgctgctcaggaacccgactggaccccaaggacaggcctgagagaaat
ggggctgcctttttcagaatgaagcagcaggtatggggggccctcaccaacctaggctcg
gcactgccctgtggctccctcagtaactacaagctaccctgggtgacagtttctcatcac
gatccggaggtccccttcaaccacagcttcattgagcccccctctgccggctgggcctct
gacgactccttctcttctgatcctgactctggagaagaggatgaagctcatgcctactcc
gtgccacctcgagaagggaaggtccctatggcccaagaagagtcgccagaagctagcctt
cctggaggctccttccctccccctgaggatgcctccacaccattccccattccacgtacc
tccagcctggctagggccaagaggccatccgtctcctttgctgaaggcacgaagtttgca
ccacagaatggccgaagctctggggatctctccagccccatacgaaaacccaagagactc
tccagaggtgctcagccccatcctgaagggcaggaggcggaggagtctacaggcccagag
caagtgaacacagaggaggatgctcttacagccgcaagctctggagatcctgccactagt
cacggccaacttccacctggtagccagacggtagctgagtgtgcggagaccaccgatgga
ggcatccaggacagctcgggatctgtggccactatctatatgctggcagggacaccccag
aaacctgagggtcctgtctggtctgtctttcgtcgtttgggaaactaccagaaagatcag
gcagctcccaaagtaaagagtgctatccctaagcctttgcgccgatctctgggtcggaac
caggctagcactggctcagctccagatgccgtgctctccggggttatggagtccaccgca
gttaggccagaggaaacacccagaggtctgggagatggcattgagagctcagggactgtc
caagagccagacgctggaggcagttcccagaagcaggccgaagagaaggagcaagaggag
cccctgtatgagaatgtcgtgcccatgtccgtgctgccacagcactga
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