Mus caroli (Ryukyu mouse): 110305693
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Entry
110305693 CDS
T05910
Symbol
Cltc
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04142
Lysosome biogenesis
mcal04144
Endocytosis
mcal04721
Synaptic vesicle cycle
mcal04961
Endocrine and other factor-regulated calcium reabsorption
mcal05016
Huntington disease
mcal05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110305693 (Cltc)
04142 Lysosome biogenesis
110305693 (Cltc)
09150 Organismal Systems
09155 Excretory system
04961 Endocrine and other factor-regulated calcium reabsorption
110305693 (Cltc)
09156 Nervous system
04721 Synaptic vesicle cycle
110305693 (Cltc)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
110305693 (Cltc)
09164 Neurodegenerative disease
05016 Huntington disease
110305693 (Cltc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110305693 (Cltc)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110305693 (Cltc)
Membrane trafficking [BR:
mcal04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
110305693 (Cltc)
Exosome [BR:
mcal04147
]
Exosomal proteins
Proteins found in most exosomes
110305693 (Cltc)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
TPR_1
NEW1_HB
Ig_TRAPPC10_3rd
Motif
Other DBs
NCBI-GeneID:
110305693
NCBI-ProteinID:
XP_029339872
Ensembl:
MGP_CAROLIEiJ_G0016919
UniProt:
A0A6P7RGQ9
LinkDB
All DBs
Position
11:complement(81894396..81957084)
Genome browser
AA seq
1683 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKDAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQD
EEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV
NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSV
LLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYME
VVQAANASGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYF
SKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQ
EEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDK
LDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFG
YSM
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattctgcccattcgctttcaggagcatctccagctccagaacctgggtatc
aacccagcaaacattggcttcagtaccttgactatggagtcagacaaattcatctgcatt
agagaaaaagtgggagagcaggcccaggtggtaatcattgatatgaatgatccaagtaat
ccaattcgaagaccaatctcagcagacagtgccatcatgaatcctgccagcaaagtgatt
gcactgaaagatgctggcaaaactcttcagatatttaacattgaaatgaaaagtaaaatg
aaggcccataccatgactgatgacgtcaccttctggaaatggatctctttgaatacggtt
gctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtg
aaaatgtttgatcgtcattctagcctcgcaggatgccagatcatcaattaccgtacagat
gcaaagcagaagtggttgcttctgactggcatatctgcacagcaaaatcgtgtggttgga
gctatgcagctgtattctgtagataggaaagtttctcagcctattgaagggcatgcagct
agttttgcacaatttaagatggaaggaaatgcagaagaatcaacattattttgttttgct
gtgcggggtcaggcaggaggaaagttacatatcattgaagttggtaccccacccacaggg
aatcaacctttcccaaagaaggcagtggatgtgttctttcctccagaagcacaaaatgac
tttcctgttgcaatgcagatcagtgagaagcatgatgtggtgttcctgattaccaagtat
ggctacattcacctctatgatcttgagactggcacgtgcatctacatgaacagaatcagt
ggagagaccatcttcgtcactgcacctcatgaagccacagctggaataataggagtcaac
agaaagggacaggtcctgtcagtttgtgtggaagaggagaacataattccttacatcacc
aatgtcctacaaaatcctgacttggctctgagaatggctgtgcggaacaacttagctggt
gctgaagaactctttgcccggaaatttaatgctctcttcgcccagggaaactactcagag
gctgcaaaggtggctgctaatgctccaaagggaatcctccgtactccagataccatccgt
cgattccagagtgtcccagctcagccaggtcaaacttcacctctacttcagtattttgga
atccttttggaccagggccagctgaacaaatacgagtccttagagttatgtagacctgta
cttcagcaagggcggaaacagcttttggagaaatggctgaaagaagataagctggaatgt
tctgaagaactgggtgatctcgttaaatctgtggacccaacattagcactgagtgtttac
ctcagggccaatgtacctaataaagtcatccagtgctttgcagagacaggccaagtccag
aagattgttttatatgctaaaaaagttggctatactccagactggatctttctcctgcga
aatgtcatgcggatcagtccagatcaaggacagcagtttgctcaaatgttagttcaggat
gaagagcctcttgctgatatcacccagattgtggatgtctttatggaatacaatctaatc
caacaatgtactgccttcctacttgatgctttgaagaataatcgtccctctgaaggccct
ttgcagactcgattgcttgaaatgaaccttatgcacgcacctcaggttgcagatgccatt
cttgggaatcagatgttcacccactatgaccgggctcatatcgcccagctgtgtgagaag
gcgggcctgctgcagcgtgcattagaacacttcacagatttatatgatataaaacgtgca
gttgttcatacccatcttcttaaccctgagtggttagtgaattactttgggtccttatca
gttgaagattccctagaatgtctcagagccatgctgtctgctaatattcgtcaaaatcta
cagatctgtgttcaggtggcttctaaatatcacgaacagctgtcaactcagtctctgatt
gagctctttgaatcattcaagagttttgaaggtctcttttattttctggggtccattgtt
aactttagtcaggacccagatgtgcactttaaatatattcaggcggcttgcaagactgga
caaatcaaagaagtggaaagaatctgcagagaaagcaactgctatgatcccgagcgagtc
aagaattttctcaaggaggcaaaactaacagatcagttgccactcatcattgtctgtgat
cggtttgactttgtccatgacctggtgctgtatttatatagaaacaatcttcagaagtat
atagagatatatgtccagaaggtaaatccaagtcgacttcctgtggttattggaggattg
ctggatgttgactgctctgaagatgtcattaaaaatttgattcttgttgtgagaggtcaa
ttctctactgatgagcttgttgctgaagtcgagaaaagaaacagattgaagctgctgctt
ccttggcttgaggccagaattcatgagggctgtgaggagcctgctactcacaatgcacta
gccaaaatatacattgacagtaacaacaacccagagagatttcttcgtgaaaatccttat
tatgacagtcgtgttgttgggaagtactgtgagaagagagacccccatctggcttgtgtt
gcttatgagcgtggccagtgtgatctggagctcatcaatgtttgcaatgagaattccctc
ttcaaaagtctttctcgctacttagtccgtcgaaaggatccagaattgtggggtagtgtg
ctactggaaagcaatccatacagaagaccattaattgaccaggttgtacagacagccttg
tctgaaactcaggacccagaagaagtgtcagtaactgtgaaggcttttatgacagcagat
cttcctaatgagctcattgaactgctggagaaaattgttctggataactctgtattcagt
gagcacaggaatctgcaaaacctcctcatcctcactgcaattaaggctgaccgaacacgt
gttatggagtatattaaccgcctggataattatgatgctccagatattgccaacattgcc
atcagcaatgagctgtttgaagaggcatttgctattttccggaagtttgatgtcaatact
tcagcagtgcaggtgttgattgaacatattggaaacctggatcgtgcatatgagtttgct
gaacgctgcaatgagcctgctgtttggagtcaacttgcaaaagctcagttgcagaaagga
atggtgaaggaagccattgattcttacatcaaagcagatgatccttcatcttacatggaa
gttgtccaggctgccaatgccagcggaaactgggaagaattggtgaagtatttgcagatg
gcacgcaagaaggctagagagtcctatgtggagacagaattgatatttgcactggctaaa
acaaaccgccttgcagaactagaagagttcatcaatggaccaaataacgctcatattcag
caagttggtgaccgttgttatgatgaaaaaatgtatgatgctgctaagttgttgtacaat
aatgtttctaactttggacgcttggcatctacccttgttcaccttggcgagtatcaggca
gcagttgatggtgccagaaaagctaatagtactcgaacatggaaagaggtctgctttgcc
tgtgtagatgggaaagagttccgccttgctcagatgtgtggactccatattgtggtgcat
gcagatgaattagaggagcttatcaactactatcaggatcgtggatattttgaagaactc
atcaccatgttggaggcagccttgggactggagcgagctcacatgggaatgttcacagag
ctagctattttgtattctaaattcaagccacagaaaatgagagaacacctggagttgttc
tggtcgagagtgaatattcctaaggtgctgagagctgcagaacaagctcatctctgggcc
gagctggtgtttctgtatgacaaatacgaagagtatgataatgccatcattaccatgatg
aatcaccccaccgatgcatggaaggaagggcagttcaaagacatcatcaccaaggtggct
aatgtggaactgtactacaaagcaatccagttctacttagaattcaagcctttgctgtta
aatgacttgctcatggtgctgtctccacggttggatcacactcgtgcagtcaattatttc
agcaaggtaaaacagctaccactggtgaaaccatatttacgctcagttcagaaccacaac
aacaaatctgtgaatgagtcactgaacaacctctttattactgaagaagattaccaggct
ctgcgaacatcaatagatgcttatgacaactttgacaacatctcacttgctcagcgtttg
gaaaagcacgaacttattgaattcagaagaattgctgcttatctcttcaaaggcaacaat
cgctggaaacagagtgtagagctgtgcaagaaagacagcctttacaaggatgcaatgcag
tatgcctctgaatctaaagacacagaattggctgaagagctcctacagtggtttttgcag
gaagaaaaaagagaatgctttggagcttgtctctttacttgttatgatctcttaaggcca
gatgtcgtcctggaaaccgcatggagacataatatcatggatttcgccatgccctatttc
atccaggtcatgaaggaatatttgaccaaggttgatgcaataaaggaaaaggtggataaa
ttagatgcttcggagtcgctgagaaaagaagaagaacaagccacagagacacagcccatt
gtttatggtcagccccagctgatgctaacagcaggacccagtgtggcagtccctccccag
gcaccttttggttatggttatactgcaccaccatatgggcagccacagcctggctttggg
tacagcatgtga
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integrated database retrieval system
