Mus caroli (Ryukyu mouse): 110305766
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Entry
110305766 CDS
T05910
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110305766 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110305766 (Ddx42)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110305766 (Ddx42)
Spliceosome [BR:
mcal03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110305766 (Ddx42)
Complex B
110305766 (Ddx42)
Complex C
U2 SnRNP specific factors
110305766 (Ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
110305766
NCBI-ProteinID:
XP_021033525
Ensembl:
MGP_CAROLIEiJ_G0017314
UniProt:
A0A6P5QQX1
LinkDB
All DBs
Position
11:102122410..102153835
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AA seq
929 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGTSSAGASGWTSAGSLNSVPTNSAQQGHNSPDNPSTSSTKNIPGFNNSGNISSAPVTY
PSIGAQGVNNTASGNNSREGIGGGNGKRERYTENRGGGRHSHGDGGNRHGDGGRHGDGYR
YPESGSRHTDGHRHGETRHGGSAGRHGESRGANDGRNGESRKEGFNRENKMDPKVDSSRM
DKVDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggcggccctggaaccaagcggggatttggttttggaggttttgct
atcagtgctgggaagaaggaggaagccaaactgccacagcagtcccacagtgcctttggg
gcagccagctcttcttctggatttggaaagtctgctccaccacagcttccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcgtattttgaagatgaagaa
gaagactccagcaatgtagatttaccttacattcctgctgaaaactcacctacccgccag
cagttccattccaagcccgcagactctgacagtgatgatgaccccttagaggcattcatg
gctgaagtggaggatcaggctgctagagacatgaagagacttgaagaaaaggacaaggaa
agaaaaaacgtcaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagagaacccaactgctggggtggttcaggaggaagaggaggacaat
ttggagtatgacagtgatggaaatccaattgcaccttccaaaaaaattatcgatcccctt
cctcccattgatcattcggagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcactccacagcagttaatagacctgcggcataagctcaac
cttcgggtctctggtgctgcacctcccagaccaggaagtagctttgctcattttgggttt
gatgaacaacttatgcaccagattaggaaatctgagtacacacagccgaccccaatccag
tgtcagggtgtacctgtagcactaagtgggagagacatgattggtattgctaaaacaggc
agtgggaaaactgcagcctttatttggcccatgttgattcatataatggatcagaaggaa
ttggaaccaggtgatggaccaattgcagttattgtgtgtcctactagggagctttgtcaa
cagatccacgcagaatgtaagcggtttgggaaagcgtataatcttcgatcagtggccgtg
tatggaggagggagcatgtgggagcaagccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaaaaaagctactaatcttcaaaga
gtctcttaccttgtgtttgatgaagccgatcgaatgtttgacatgggatttgagtatcag
gttcggtccatagcaagtcatgttcgtcctgacagacaaactctcttattcagtgcaact
tttcgaaaaaagattgaaaagttggccagagacatcttgattgaccctattcgagtggtg
cagggagacattggagaggcaaatgaagatgtgacccagatcgtggagatactccattcc
ggacctagtaaatggaactggcttactcggcgtctggtggagtttacttcctcggggagt
gtcctcttgtttgttactaagaaagccaatgctgaagaactagccaataaccttaagcag
gagggtcataatcttggtctgctccatggggacatggatcagagtgagagaaacaaggtt
atttcagattttaagaaaaaggacatccccgtcctggtggccactgatgttgcagcccgt
ggtctggatattccttccattaagacagtcattaactatgatgtagcccgggacattgat
acccacactcacaggattggccggacaggaagagctggtgagaagggtgtagcctatacc
ttactgactccaaaggacagcaattttgctggtgaccttgtacggaacctggaaggagcc
aaccaacatgtttctaaggagctcttagatcttgcaatgcagaatgcctggtttcggaaa
tctcgcttcaaaggagggaaaggcaaaaagctgaacattggtggaggcggcttgggctat
agagagcggcctgggctgggctctgagaattcggaccgaggaaataataacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagataggctcacagcaatg
aaagcagcttttcagtcccagtacaagagtcactttgttgcagccagtttaagtaaccag
aaggccggaacctcttctgcaggggcaagtggatggactagtgcaggaagcttaaattct
gttccaactaattcagcacagcagggccataatagtcctgacaaccccagcaccagttct
accaagaacatcccaggcttcaacaactctgggaatatcagtagtgccccagtgacctac
ccttctattggagcccaaggagtcaacaacacagcttcagggaataacagccgtgaaggg
attgggggtggcaatgggaagagagagagatatactgagaaccggggtggtggccgtcat
agccatggagatggtggcaatcgacatggagatggtgggcgccatggagatggataccgt
tatccagaaagtggtagccgtcatactgatggccaccgacatggagagaccaggcacgga
ggaagtgccggcagacacggagagagccggggtgcaaatgatggcaggaatggagaaagc
aggaaagaaggttttaatcgtgaaaacaagatggaccccaaggtggatagcagcaggatg
gacaaagtggacagcaagacagataagacacccgatggctttgctgttccagagccaccc
aaacgaaagaaaagccgatgggatagttag
DBGET
integrated database retrieval system
