Mus caroli (Ryukyu mouse): 110306736
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Entry
110306736 CDS
T05910
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110306736 (Ddx1)
03016 Transfer RNA biogenesis [BR:
mcal03016
]
110306736 (Ddx1)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110306736 (Ddx1)
Spliceosome [BR:
mcal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110306736 (Ddx1)
Transfer RNA biogenesis [BR:
mcal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110306736 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
110306736
NCBI-ProteinID:
XP_021034458
Ensembl:
MGP_CAROLIEiJ_G0017622
UniProt:
A0A6P5QYM4
LinkDB
All DBs
Position
12:complement(9803924..9831852)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgaaatgggtgttatgcccgagattgcacaagctgtggaggagatg
gattggcttctaccaactgatatccaggcagaatctatcccattgatcctaggaggaggg
gatgtactcatggctgcagaaacaggaagtggaaaaactggtgcatttagtattcccgtt
atccagatagtgtatgaaactctgaaagaccaacaggaaggaaagaaagggaaaacaact
attaaaactggtgcttcagtgctcaacaagtggcagatgaacccatatgatagagggtct
gcttttgcaattgggtcagatggtctgtgttgtcaaagcagagaagtgaaggagtggcat
ggatgcagagcgactagaggactgctgaaagggaagcactactatgaggtgtcctgtcat
gaccaagggctgtgcagagttgggtggtctaccatgcaggcttccttagacctaggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatctcataataaacaatttgat
aattatggagaggaattcactatgcatgacaccattggatgttacttggatatcgataaa
gggcatgtgaagttctctaagaacggaaaagatcttggtctggcatttgaaataccagca
catataaaaaaccaagccctcttccctgcctgtgttttgaagaatgctgaattgaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gccccagatagttacatcgtcaaatcacagcacacaggtaatgcacaggtatcacaaaca
aaatttctcccgaatgctccaaaagctctcattgtggaaccctccagagagttagctgag
caaaccttgaacaacgtgaagcagtttaagaagtatattgataatcctaaattgcgggag
cttctcataattggtggcgttgcggctcgggatcagctctctgtcctggataatggggtt
gacattgttgtcggtactccaggaagactggatgatttggtgtcgactggaaagctcaac
ttgtctcaagttagattcctggtcctggatgaagcagatgggcttctctctcaaggttat
tctgacttcattaacaggatgcacagccagattcctcagattacctctgatgggaaaaga
cttcaggtgattgtttgctctgctactctgcattcttttgatgtaaagaagctatctgag
aagataatgcattttcccacatgggtcgatttgaaaggagaagattctgttccagatact
gtgcatcatgtcgttgtccctgtgaaccccaaaactgacaagctttgggaaaggctgggg
aagaaccacattcgaactgatgatgtacatgcaaaggataacacaagacctggtgctaac
agtccagagatgtggtctgaagctattaaaatactgaagggggagtatgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgtagaactaaaattgactgtgat
aacttggagcagtactttatgcagcaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtatgtcttcatggtgacagaaagcctcatgagagaaagcaaaacttggaacga
tttaagaaaggagacgtaagattcttgatttgcacagacgtagctgctagagggattgat
atccatggtgttccttatgttataaacgtcaccctgcctgatgagaagcagaattatgtg
caccggattggcagagtgggacgagctgaaaggatgggcctggctatttccctggtggca
acagagaaagaaaaggtttggtatcatgtatgtagcaaccgtgggaagggatgctataac
actagactcaaggaagatggcggctgtactatctggtacaatgaaatgcagctactttcc
gagatagaagagcacctgaactgtaccatttcccaggtggagccagatataaaggttcca
gtggatgagtttgatgggaaagttacatatggtcaaaaaagggctgctggcggtggaaac
tataaaggccatgtggatatcctggcacctaccgttcaagagttggctgcccttgaaaag
gaagcacagacatctttcctacaccttggctaccttcccaaccagctgttcagaaccttc
tga
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