Mus caroli (Ryukyu mouse): 110306746
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Entry
110306746 CDS
T05910
Symbol
Hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X5
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04066
HIF-1 signaling pathway
mcal04137
Mitophagy - animal
mcal04140
Autophagy - animal
mcal04148
Efferocytosis
mcal04659
Th17 cell differentiation
mcal04919
Thyroid hormone signaling pathway
mcal05167
Kaposi sarcoma-associated herpesvirus infection
mcal05200
Pathways in cancer
mcal05205
Proteoglycans in cancer
mcal05208
Chemical carcinogenesis - reactive oxygen species
mcal05211
Renal cell carcinoma
mcal05230
Central carbon metabolism in cancer
mcal05231
Choline metabolism in cancer
mcal05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
110306746 (Hif1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110306746 (Hif1a)
04137 Mitophagy - animal
110306746 (Hif1a)
04148 Efferocytosis
110306746 (Hif1a)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
110306746 (Hif1a)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
110306746 (Hif1a)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110306746 (Hif1a)
05205 Proteoglycans in cancer
110306746 (Hif1a)
05208 Chemical carcinogenesis - reactive oxygen species
110306746 (Hif1a)
05230 Central carbon metabolism in cancer
110306746 (Hif1a)
05231 Choline metabolism in cancer
110306746 (Hif1a)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
110306746 (Hif1a)
09162 Cancer: specific types
05211 Renal cell carcinoma
110306746 (Hif1a)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
110306746 (Hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110306746 (Hif1a)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110306746 (Hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
DDRGK
HLH
Motif
Other DBs
NCBI-GeneID:
110306746
NCBI-ProteinID:
XP_021034481
Ensembl:
MGP_CAROLIEiJ_G0017848
UniProt:
A0A6P5QYP1
LinkDB
All DBs
Position
12:68519656..68559210
Genome browser
AA seq
830 aa
AA seq
DB search
MEGAGGENEKKNRMSSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASV
MRLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY
MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTSRG
RTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTES
VLKPVESSDMKMTQLFTKVESEDTSCLFDKLKKEPDALTLLAPAAGDTIISLDFGSDGQC
LDTETEDQQLEDVPLYNDVMFPSSNEKLNINLAMSPLPASETPKPLRSSADPALNQEVAL
KLESSPESLGLSFTMPQIQDRPASPSDGSTRQSSPEPNSPSEYCFDVDSDMVNVFKLELV
EKLFAEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESNSPSPPSMSTV
TGFQQTQLQKPTITATATTTATTATTDESKTETKDNKEDIKILIASPSSTQVPQETTTTK
ASAYSGTHSRTASPDRAGKRVIEQTDKAHPRSLNLSVTLNQRNTVPEEELNPKTIASQNA
QRKRKMEHDGSLFQAAGIGTLLQQPGDCAPAMSLSWKRVKGFISSEQNGTEQKTIILIPS
DLACRLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggcggcgagaacgagaagaaaaataggatgagttctgaacgtcgaaaa
gaaaagtctagagatgcagcaagatctcggcgaagcaaagagtctgaagttttttatgag
cttgctcatcagttgccacttccccacaatgtgagctcacatcttgataaagcttctgtt
atgaggctcaccatcagttatttacgtgtgagaaagcttctggatgccggtgatctagac
attgaagatgaaatgaaagcacagatgaactgcttttatctgaaagccctggatggcttt
gtaatggtgctaacagatgacggtgacatgatttacatttctgataacgtgaacaaatac
atggggttaactcagtttgaactaactggacacagtgtgtttgattttactcatccatgt
gaccatgaggaaatgagagaaatgcttacacacagaaatggcccagtgagaaaaggaaaa
gaacaaaacacacagcggagcttttttctcagaatgaagtgcaccctaacaagccggggg
aggacgatgaacatcaagtcagcaacgtggaaggtgcttcactgcacgggccatattcat
gtctatgataccaacagtaaccaacctcagtgtgggtacaagaaaccacccatgacgtgc
ttggtgctgatttgtgaacccattcctcatccgtcaaatattgaaattcctttagacagc
aagacatttctcagtcgacacagcctcgatatgaaattttcttactgtgatgaaagaatt
actgagttgatgggttatgagccggaagaacttttgggccgctcaatttatgaatattat
catgctttggattctgatcatctgaccaaaactcaccatgatatgttcactaaaggacaa
gtcaccacaggacagtacaggatgcttgccaaaagaggcggatacgtctgggttgaaact
caagcaactgtcatatataatacgaagaactcccagccacagtgcattgtgtgtgtgaat
tatgttgtaagtggtattattcagcacgacttgattttctcccttcaacaaacagaatct
gtgctcaaaccagttgaatcttcagatatgaagatgactcagctgttcaccaaggttgaa
tcagaggatacaagctgcctttttgataagcttaagaaggagcctgacgctctcactctg
ctggctccagctgctggcgacaccatcatctctctggattttggcagcgatggtcagtgc
ttagacacagaaactgaagatcaacaacttgaagatgttccattatataatgatgtaatg
tttccttcttctaatgaaaaattaaatataaacctggcaatgtctcctttacctgcgtct
gaaacgccaaagccacttcgaagtagtgctgatcctgcactgaatcaagaggttgcatta
aaattagaatcaagtccagagtcactgggactttcttttaccatgccccagattcaagat
cggccagcaagtccttctgatggaagcactagacaaagttcacctgagcctaacagtccc
agtgaatattgctttgatgtggatagcgatatggtcaatgtattcaagttggaactggtg
gaaaaactgtttgctgaagacacagaggcaaagaatccattttcaactcaggacactgat
ttagacttggagatgctggctccctatatcccaatggatgatgatttccagttacgttcc
tttgatcagttgtcaccattagagagcaattctccaagccctccaagtatgagcacagtt
accgggttccagcagacccagttacagaaacctaccatcactgccactgccaccacaact
gctaccactgccaccaccgatgaatcaaaaacagagacaaaggacaataaagaagatatt
aaaatactgattgcatctccatcttctacccaagtacctcaagaaacgaccactactaag
gcatcagcatacagtggcactcacagtcggacagcctcaccagacagagcaggaaagaga
gtcatagaacagacagacaaagctcatccaaggagccttaacctgtctgtcactttgaat
caaagaaatactgttcctgaggaagaattaaacccaaagacaatagcttcgcagaatgct
cagaggaagcgaaaaatggaacatgatggctccctttttcaagcagcaggaattggaaca
ttactgcagcaaccaggtgactgtgcacctgctatgtcactttcttggaaacgagtaaaa
ggattcatatctagtgaacagaatggaacggagcaaaagacaattattttaataccctcc
gacttagcctgtaggctgctggggcagtcaatggatgagagtggattaccacagctgacc
agttacgactgtgaagttaatgctcctatacaaggcagcagaaacctactgcagggtgaa
gaattactcagagctttggatcaagttaactga
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