Mus caroli (Ryukyu mouse): 110306804
Help
Entry
110306804 CDS
T05910
Symbol
Cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110306804 (Cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110306804 (Cpsf3)
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110306804 (Cpsf3)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110306804 (Cpsf3)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110306804 (Cpsf3)
U7-dependent histone pre-mRNA processing factors
110306804 (Cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
110306804
NCBI-ProteinID:
XP_021034573
Ensembl:
MGP_CAROLIEiJ_G0017640
UniProt:
A0A6P5QLK5
LinkDB
All DBs
Position
12:17730718..17759750
Genome browser
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEEL
EIQEKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSE
DDESLREMVELAAQRLYEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgattcctgcagaggagagcgaccagctgctgatccgaccccttggtgctggg
caagaagtgggaagatcatgtattattctggagttcaaaggaaggaaaatcatgctggac
tgtgggatccaccctggcctggaaggaatggatgctcttccttacattgacctcattgac
ccagctgagatcgaccttctattgatcagtcatttccatttggatcactgtggagccctg
ccctggttccttcagaagacaagtttcaaaggacggacgtttatgacccacgctacgaaa
gctatttatagatggcttctctcagactatgtcaaagtcagcaacatatcagcagatgac
atgctgtacactgagacagacttggaagaaagcatggacaaaatcgaaaccatcaatttt
catgaagttaaggaagttgcaggaatcaagttctggtgttaccatgctggccatgtcctg
ggagcagccatgtttatgatagagatcgccggtgtgaagcttttgtatacaggtgatttc
tcaagacaagaagacagacacctaatggccgctgagattcctaatattaagccagacatc
ctgatcattgagtctacgtatgggacccatatccatgagaagcgtgaagagcgagaagca
agattctgcaacactgtgcacgacattgtcaacagagggggcagagggctcattcctgtc
tttgctctcggcagagctcaggagctgctcctgattctagatgagtactggcagaaccac
ccggagctgcacgacatccccatttactatgcatcgtctctggccaagaagtgcatggcc
gtgtaccagacctacgtgaacgccatgaacgacaagatccggaagcagatcaacatcaac
aaccccttcgttttcaagcacatcagcaacctcaagagcatggatcactttgatgacatt
ggccccagtgttgtgatggcctcaccaggcatgattcaaaacggcttatccagagagctt
tttgaaagctggtgtacagataagaggaatggcgtcatcatagcggggtactgtgtcgaa
gggacacttgccaagcacatcatgtctgagcctgaagaaatcacgaccatgtctggacag
aagttgccactgaaaatgtcggttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgtgctctgaagccacctcacgtgattttagtccatggggaa
cagaatgaaatggccaggctgaaagcagcgctgatccgagaatatgaagataatgacgaa
gttcacatcgaggttcacaatcctcggaacacagaggccgtgaccctgaacttcagggga
gagaagctcgccaaggtcatgggctttttggcagacaagaaaccagaacagggccagcgg
gtctctggaattcttgttaaaagaaactttaattaccacatactctctccctgtgacctc
tccaattacactgacctggccatgagcactgtgaaacagacccaggccatcccgtacacg
gggcccttttacctgctctactaccagctccagaaattgacaggtgatgtagaagaatta
gaaattcaagaaaagcctgctctgaaggtgttcaagagcatcactgtggtgcaggagccg
ggcatggtggttctggagtggctggcgaacccctctaacgacatgtatgcagacacagtg
accaccgtgatattggaagttcagtcgaatccaaaaataaggaaaggtgcagtgcagaag
gtctctaagaagctagagatgcacgtttacagcaagaggctggaggtcatgctccaggac
atatttggagaagactgtgtcagtgtgaaagatgactccgtcctcagtgtcacagtggac
gggaaaacagcaaatattaatctggagactcgggctgtagaatgtgaagaaggaagtgaa
gatgatgaatccctccgagaaatggtggaactggccgcccagagactatacgaggccctg
acaccggtgcactga
DBGET
integrated database retrieval system
