Mus caroli (Ryukyu mouse): 110307181
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Entry
110307181 CDS
T05910
Symbol
Pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110307181 (Pnn)
03015 mRNA surveillance pathway
110307181 (Pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110307181 (Pnn)
03041 Spliceosome [BR:
mcal03041
]
110307181 (Pnn)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110307181 (Pnn)
Spliceosome [BR:
mcal03041
]
Complex C
Other components
EJC/TREX
110307181 (Pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
110307181
NCBI-ProteinID:
XP_021035110
Ensembl:
MGP_CAROLIEiJ_G0017779
UniProt:
A0A6P5QX24
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All DBs
Position
12:54519699..54527513
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AA seq
726 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEAGIVHSDAEKEQEEEEPKQ
EMEVKTEEETEVREGEKQQDSQPEEVMDVLEMVESVKHVIAEQEVMETNQVESIEPSENE
TSKELEPEMEFDVEPDKECKSLSPGKENINSQEVEKESEEKEEKEEKEPEPQPEPVAQPQ
PPPQPLPQSQPHSQPHSQPQPVLQSQPLCQPETLPLAVLQPPPQVIQEQGNLLPERKDFP
LESIKLPEVSVEPVLTIHSENKSKNKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSS
SGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVD
RKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSD
RKDKRR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgccgtgagagctttgcaggagcagctagagaaggccaaagagagcctcaag
aatgtggacgagaatatccgcaagctcaccgggcgggacccgaatgatgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggacgaggtagcttattg
ctaaggcgtggattctcagatagtggaggaggacccccagccaaacaaagagacctggaa
ggggcagtcagtaggctgggtggggagcgtcggacaagaagagaatcacgccaggagagc
gacccagaagacgatgatgttaaaaagccagcactgcaatcttccgttgtagctacctcc
aaagaacgcacgcgcagagacctcatccaggatcaaaacatggatgagaaggggaagcaa
aggaaccgacgaatatttggcttgttgatgggcactcttcagaaatttaaacaagaatct
actgttgctactgaacggcaaaaaagacgccaagaaattgaacaaaaacttgaagttcag
gctgaagaagagagaaagcaggttgaaaatgagaggcgagaactgtttgaggagagacgt
gctaaacagacggaactgcggcttctagagcagaaggttgagcttgcgcagctgcaagaa
gaatggaatgaacataatgccaagataattaagtatataaggaccaagacaaagccccat
ttgttctatattcctggaagaatgtgtccagctacccaaaagctaatagaagagtcacag
agaaagatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtgcgtaat
gaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaaatagaggaggcaggagaggaagaggagaag
gaagcaggtatagttcatagtgatgcagagaaagaacaggaggaggaggaaccaaagcag
gaaatggaggttaagactgaggaggagactgaggtaagagaaggtgagaagcagcaggat
agtcagccagaagaagtgatggatgtgctagagatggtggaaagtgtcaaacacgtaatt
gctgagcaggaagtaatggaaactaatcaagttgaaagcatagaaccttcagaaaatgaa
actagcaaagaattggagccagagatggaatttgatgttgagccagataaagaatgtaaa
tctctttctcctggaaaagagaatattaattctcaggaagtggaaaaggagtctgaggag
aaagaggaaaaagaagagaaagaacctgagccccaacctgagcctgtggctcagcctcag
cccccacctcagcccctgccccagagccagccccattctcagccccactcccagccccaa
cctgtactccagtcccagcctctctgtcagcctgagacattgccattagctgttttgcag
cctccacctcaggttattcaggagcaagggaatctactacctgagcggaaggattttcct
ctagagtctataaaactccctgaggtgtctgtagagccagtcttgacaatacattcagaa
aacaaaagcaagaataagactaggagcaggagcagggggcgagcaaggaataaaacaagc
aagagtagaagtcggagcagcagcagcagtagttccagtagcagctctactagtagcagc
agcgggagcagctccagcagtggcagcagcagtagtcgaagcagctccagtagcagctcc
agcacgagtgggagcagcagcagagacagcagcagcagcactagcagtagcagtgagagt
aggagtcgcagtaggggccgaggacataaccgagataggaagcacagaaggagcgtggac
cggaagcgaagggatacttcaggactagaaagaagtcacaagtcttcaaaaggtggtagt
agtagagatacaaaaggatcaaaggataagaattcccgctctgacagaaaaaggtctata
tcagagagtagtcgatcaggcaaaagatcttcaagaagtgaaagagaccgaaaatcagac
aggaaagacaaaaggcgttaa
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