KEGG   Mus caroli (Ryukyu mouse): 110307181
Entry
110307181         CDS       T05910                                 
Symbol
Pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03013  Nucleocytoplasmic transport
mcal03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110307181 (Pnn)
   03015 mRNA surveillance pathway
    110307181 (Pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110307181 (Pnn)
   03041 Spliceosome [BR:mcal03041]
    110307181 (Pnn)
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110307181 (Pnn)
Spliceosome [BR:mcal03041]
 Complex C
  Other components
   EJC/TREX
    110307181 (Pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 110307181
NCBI-ProteinID: XP_021035110
Ensembl: MGP_CAROLIEiJ_G0017779
UniProt: A0A6P5QX24
LinkDB
Position
12:54519699..54527513
AA seq 726 aa
MAVAVRALQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEAGIVHSDAEKEQEEEEPKQ
EMEVKTEEETEVREGEKQQDSQPEEVMDVLEMVESVKHVIAEQEVMETNQVESIEPSENE
TSKELEPEMEFDVEPDKECKSLSPGKENINSQEVEKESEEKEEKEEKEPEPQPEPVAQPQ
PPPQPLPQSQPHSQPHSQPQPVLQSQPLCQPETLPLAVLQPPPQVIQEQGNLLPERKDFP
LESIKLPEVSVEPVLTIHSENKSKNKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSS
SGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVD
RKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSD
RKDKRR
NT seq 2181 nt   +upstreamnt  +downstreamnt
atggcggtcgccgtgagagctttgcaggagcagctagagaaggccaaagagagcctcaag
aatgtggacgagaatatccgcaagctcaccgggcgggacccgaatgatgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggacgaggtagcttattg
ctaaggcgtggattctcagatagtggaggaggacccccagccaaacaaagagacctggaa
ggggcagtcagtaggctgggtggggagcgtcggacaagaagagaatcacgccaggagagc
gacccagaagacgatgatgttaaaaagccagcactgcaatcttccgttgtagctacctcc
aaagaacgcacgcgcagagacctcatccaggatcaaaacatggatgagaaggggaagcaa
aggaaccgacgaatatttggcttgttgatgggcactcttcagaaatttaaacaagaatct
actgttgctactgaacggcaaaaaagacgccaagaaattgaacaaaaacttgaagttcag
gctgaagaagagagaaagcaggttgaaaatgagaggcgagaactgtttgaggagagacgt
gctaaacagacggaactgcggcttctagagcagaaggttgagcttgcgcagctgcaagaa
gaatggaatgaacataatgccaagataattaagtatataaggaccaagacaaagccccat
ttgttctatattcctggaagaatgtgtccagctacccaaaagctaatagaagagtcacag
agaaagatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtgcgtaat
gaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaaatagaggaggcaggagaggaagaggagaag
gaagcaggtatagttcatagtgatgcagagaaagaacaggaggaggaggaaccaaagcag
gaaatggaggttaagactgaggaggagactgaggtaagagaaggtgagaagcagcaggat
agtcagccagaagaagtgatggatgtgctagagatggtggaaagtgtcaaacacgtaatt
gctgagcaggaagtaatggaaactaatcaagttgaaagcatagaaccttcagaaaatgaa
actagcaaagaattggagccagagatggaatttgatgttgagccagataaagaatgtaaa
tctctttctcctggaaaagagaatattaattctcaggaagtggaaaaggagtctgaggag
aaagaggaaaaagaagagaaagaacctgagccccaacctgagcctgtggctcagcctcag
cccccacctcagcccctgccccagagccagccccattctcagccccactcccagccccaa
cctgtactccagtcccagcctctctgtcagcctgagacattgccattagctgttttgcag
cctccacctcaggttattcaggagcaagggaatctactacctgagcggaaggattttcct
ctagagtctataaaactccctgaggtgtctgtagagccagtcttgacaatacattcagaa
aacaaaagcaagaataagactaggagcaggagcagggggcgagcaaggaataaaacaagc
aagagtagaagtcggagcagcagcagcagtagttccagtagcagctctactagtagcagc
agcgggagcagctccagcagtggcagcagcagtagtcgaagcagctccagtagcagctcc
agcacgagtgggagcagcagcagagacagcagcagcagcactagcagtagcagtgagagt
aggagtcgcagtaggggccgaggacataaccgagataggaagcacagaaggagcgtggac
cggaagcgaagggatacttcaggactagaaagaagtcacaagtcttcaaaaggtggtagt
agtagagatacaaaaggatcaaaggataagaattcccgctctgacagaaaaaggtctata
tcagagagtagtcgatcaggcaaaagatcttcaagaagtgaaagagaccgaaaatcagac
aggaaagacaaaaggcgttaa

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