Mus caroli (Ryukyu mouse): 110307553
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Entry
110307553 CDS
T05910
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110307553 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110307553 (Mtrex)
03041 Spliceosome [BR:
mcal03041
]
110307553 (Mtrex)
03009 Ribosome biogenesis [BR:
mcal03009
]
110307553 (Mtrex)
03016 Transfer RNA biogenesis [BR:
mcal03016
]
110307553 (Mtrex)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110307553 (Mtrex)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110307553 (Mtrex)
Spliceosome [BR:
mcal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110307553 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
110307553 (Mtrex)
Ribosome biogenesis [BR:
mcal03009
]
Eukaryotic type
Pre-60S particles
Helicases
110307553 (Mtrex)
Transfer RNA biogenesis [BR:
mcal03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110307553 (Mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110307553
NCBI-ProteinID:
XP_021035446
Ensembl:
MGP_CAROLIEiJ_G0018896
UniProt:
A0A6P5QVC5
LinkDB
All DBs
Position
13:complement(106139440..106196074)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGAKKDKEKEKWKGPPGSADKAGKRLDTKLQSEPASVGKI
KRDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
IPLNPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSS
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagcttttcagcgttttcgaggatgattcgaccactgca
gcaggagccaagaaagacaaagagaaagagaagtggaaggggccaccagggtctgcagac
aaggccggtaaacgactggataccaaattacaatcagagccagccagcgtcgggaaaatc
aagagagacctagatgtcgaaggtactgatgaacctatttttggcaagaagccgagaata
gaagactcaattaatgaagatttaagcttggcggacctgatgcccagagtcaaggtacaa
tcagttgaaacagttgaaggctgtacacatgaggtcgctcttcctgcagatgaggactat
ataccacttaaccctcgagttgggaaggcagcgaaggaatatccattcattcttgatgct
ttccaaagagaagccattcagtgtgttgataataaccagtctgtgctagtatctgctcac
acatccgcaggaaagaccgtgtgtgccgagtatgctattgcattggctttaagagaaaaa
cagcgtgtaatatttaccagcccgattaaggctctaagtaatcagaaatatcgtgaaatg
tatgaagaatttcaagatgtgggactgatgactggagatgttactattaatcccacagca
tcttgtctggttatgactacagagattttgagaagtatgctgtatagaggctctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtagtatgggaagaaactattattttgcttccagataatgttcactatgtctttctt
tcggctaccattccaaatgctcggcagtttgccgaatggatttgtcacctacataaacag
ccctgtcatgttatttacactgattatcgacccactccactgcaacactacatatttcca
gcagggggagatggccttcacctggtggttgatgaaaatggtgacttcagagaagataat
tttaacactgcaatgcaagtgcttcgggatgcaggtgatttggccaaaggagaccagaag
ggacggaaaggaggaacaaaaggtccatcaaatgtgttcaagattgtgaagatgattatg
gagagaaatttccagcctgtgatcatcttcagcttcagtaagaaggactgtgaagcatat
gctcttcagatgactaagctagacttcaacacagatgaagaaaagaagatggttgaagaa
gttttcaataatgcaattgactgcttgtctgatgaagataaaaagctccctcaggttgaa
catgtgcttccacttttgaagcgggggatcggtattcaccatggtggcttacttcctatt
ttgaaagaaactatagaaattctcttctctgaaggactgataaaggccttatttgccaca
gagacttttgctatgggaattaacatgccagctagaacggttttatttacaaacgcccgt
aaatatgacgggaaggactttagatggatttcctctggtgagtatatccagatgtctggt
cgtgcaggaaggagaggcatggacgacagagggattgtgattcttatggtagacgagaag
atgagcccaactgttggaaagcagctgcttaaggggtcagctgatcctctgaacagtgct
ttccatctgacctataacatggttttgaacttactaagagtagaagaaattaaccccgag
tacatgcttgaaaaatccttctaccagttccagcattatagagcaatcccaggggtcgta
gaaaaggtaaagaactcagaagagcagtataataaaatagtaattcccaatgaagaaaat
gtggtcatctattacaagattagacagcagcttgccaagctgggaaaagagattgaagaa
tatattcataaaccaaaatactgcttgccctttctacaaccaggccgtttggtaaaggtg
aaaaatgaaggcgatgatttcggctggggagtagtagtgaacttctcaaaaaagtcaaat
gtcaagcccaattctggcgaactggatcccttgtatgtggtggaagtcctcctgcgctgt
agcaaggaaagcctgaagaactcagccactgaggcagcaaagccagcgaagccagacgag
aaaggagagatgcaggttgttccagttttggtacatctcctgtctgccatcagcactgtt
aggctctacattccaaaagaccttcgacctgtggacaacagacagagtgtcttaaaatcc
atacaggaagttcaaaggcgctttcccgacggcgttcctctgttagatccgatcgatgat
atgggcatccaagatcaaggactgaagaaagtcatccagaaagtagaggcctttgagcat
cgcatgtactcacacccactccacaacgatcccaatttggaaactgtttatacactttgt
gaaagaaaggcccagattgcactagatatcaaatctgcaaagagagaactgaagaaggca
agaactgttctgcaaatggatgagctcaaatgccgcaagcgcgttctgagacggctgggc
tttgctacatcttcggatgtcatagagatgaaaggacgggtggcttgtgaaataagcagt
gcggacgagctccttctaacggagatgatgttcaatgggcttttcaatgacctttcttca
gagcaggcaaccgcactgttaagctgttttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcagttagctggaccactccgacaaatgcaggaatgtgctaaaaggatt
gcaaaagtttcagcagaggcaaagctggagattgatgaagaaacttacctaagctcattc
aagcctcacttgatggatgtggtgtatacctgggcaactggggccacatttgcccatatc
tgcaaaatgacagatgtttttgaaggcagcataatccgttgtatgaggcgtctggaagaa
ctgcttcgacaaatgtgtcaagcagcaaaagccattgggaacacagagctggagaacaaa
tttgccgaaggaattaccaaaatcaagagggatattgtatttgctgccagcctctactta
tag
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integrated database retrieval system
