Mus caroli (Ryukyu mouse): 110307747
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Entry
110307747 CDS
T05910
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mcal00535
]
110307747
04091 Lectins [BR:
mcal04091
]
110307747
Proteoglycans [BR:
mcal00535
]
Cell surface proteoglycans
Others
110307747
Lectins [BR:
mcal04091
]
C-Type lectins
Others
110307747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
TMEM154
Motif
Other DBs
NCBI-GeneID:
110307747
NCBI-ProteinID:
XP_029340859
Ensembl:
MGP_CAROLIEiJ_G0018906
UniProt:
A0A6P7RRT9
LinkDB
All DBs
Position
13:106564147..106631320
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AA seq
2368 aa
AA seq
DB search
MGRPGACGLLLLAAFLGLCGPRGGLGASFYGESYVGLSTTEVSPELSLQLRFQTSKPQGL
LFLAAGKTDHCLIELLSGILQVKINMGTGEQLLLSEQKLRVDDLVWHSLELRYGKDAVLL
VIDKHYKTTVQLAGGMRNFTFHHGIYIGGRGGLSVPYLDRKTPNFRGCMEDVVFNQREIL
TSLRSYPGFKKVSEVSLGCSDEFFAGKDEAISFFSSRSYVTFPEWKVHGEGFLRFALQTR
TLQALLLFQSGRGRDFVALEIHEGLLKAHIGRGGTKTQLSSFSLVSDNKWHIVQLRVTGR
HVNIMVDEHRERAGLPLQSQAFVSEGPLFVGGLDDRMWETVRGLEVVSMPGKSVRGMSLK
GCLRALEANLEKRALRDALVSRDISAGCTSEGLRGTDPSVAGEDLFPPEPSPPMTIPSSP
LKNQSGSFLVLNKLEVQEGGRALLGQRHIEVDVDFMDLGINSSQILFKIQEMPGHGFLQI
DAWPAQEMERTFTLSDLRGGKVWYVHDGSEEPTDSFTFWAFSSSKQALPSQLQAPVPHVF
NITVLPVNDPPYLKLPEGHLLLFENTKQRLTPSVIQVLDPDTDSWRLRFSVLNNFNSEAG
FLENAREPGRAITGFTDTDLQDGNIFYVHRGPRNSRVVLRATDGELVSNTVVLRVMAVPW
DFEVADRTGVVVPQGGTILITQSNLSVKVNGGQHELDTLYDITHPPRFGQIQHRGFNGEW
KPVRTFSQRSVDQGQIRYYSSFKGLHQENVTDHFKFKVNIEGRVGRELLFPVTVQWLKLT
LLKNIPLEISNANKKVLDSGHLQAAAGSVAVPERELYFKLLIPPKKGKLLLGNKVLKSGS
MFSQKNITDSKVSYEPQGMPGQDSQDSFSFSIVVKHVESKDHTFRIDLKADKTHITITNT
GLYVKEGERTIITKSELFAQTLDHHVFQYKLTKSPQHGELKLVSSSASLGSDNGATEFTD
EDIVSGRLVYVHDDSETREDGLILLASATGLGQQGGVRSLDSEHTSTEIKVSVSVELKND
EKPVRVVDKIFHVVRDSQRLLTLADLCYHDPDIDFDDGQLLYTRHGIPNGDLVKAADPVR
KLYQFRQEGLREGRVLFRHHGPDSARFLIFVTDGVHYTSSLFEVSVSEAYVRIVNNTGLL
VHRGRDSFLTTANLSVTTNQDVRTDHEFEFHIVQPPKHGRLLVNNSTFHSFSQHDLKQGC
VIYRYEGDGNLDIFNLTVKVKDAYLDVSIRVQVSLEGRQHSTPILHSRSLIVEEGKPVKL
SRGKLQAGNEEDIPSEAVFTVRTPPVYGYLQISTAEDGIAGADVTPTLSFTQQDVDEGHV
LYVQTAPGQQKDQFTLDVTKDSRVVRRVEVLLELIPKWIPLKVQNLTVQEGGSKVLLQDQ
LQIASKYLESLDCEFVLLEPPKHGYVESSKFPRVKLMKFSRREVEQELIYYVHDGSEEFL
DSLTILANSSELGKQSLPQTLFVTVESVNDEAPVVTANNILQVWVNSVTEVTRGDLCAED
GDSSPQDLVYWVTPPSNGHLALKSTPGRRIQNFTQAQIDEGQLVFVHSGAMSGGFNFQVT
DGLNFAPRQIFSITARALIISLEVNRGLSIFPGSTKPLSSHDLRAVTNDDKAGNRTVTFT
VVRSPRLGRLLKMNPDNRTEDVSIFTQCLVSEGLILYQHVDLESTGWASEDSFTFTASSP
PVELGPEAFQITISYEVNESGRQSRLRANTGASVKEGDKVLIDQSKLDASNLLLQLPQPQ
RSSHEIWFQVTALPHHGTIMVGERNITTGRPYFSQHTVNVFGATYLHDDSESLADNFTFA
VWPNPKNQSTSKPEAGFLEEMFNITITPVNDQPPELKTKGLRLTVLQGDRLVMGPEILNV
EDIDSPPSEIQYEIIRHPNNGFLAMAHDPDAPAHHFTQADINNARVWFIQDRSPSSGVFY
FSVTDGKHRPLYKLFHLDVTPISITLVNLTDLLLPQGQNTVPITNTHLSAVTNGRSLQII
YRVTQPLQSGHLLIENQVVNSFGQEDLDSGRLSYHMTNLTASGDQLRFSLLTTECNLTEQ
TLNIRVQPLLWVIANLKVTNRVAHQLRTEDLDATELANRTNSDPMFEVIQPLVHGRLVRR
AVDSPVMEEVTQFTQTDINQGQLVLEPQANLTGTRTLNDSFTFLLSADHVQPATGYLAFT
IVPPDPLPLQTFTPDVPLFVTGETLVASVFSQKKLRASIKKQTEIPGNLTQGRWQGTDSW
GQLSSKEPNIDAKVSPTRVIWPYAATKVGESLSGGAMQPEMSRHPLVVIIPLAAVFLLLL
VTVVVLCVWLLSRKEDKPKSLIQPKTNPKSPSTGSRAERSGAIPTVTVTPLIRSSSSLAP
SLFRTQSYDGPALWGRSLWRNVLLGTRG
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atggggcggcccggggcctgcggcctcctgttgctcgccgcctttctggggctctgcggg
ccgcgcggggggctcggagcatctttttatggggaaagctacgtggggctcagcaccacc
gaggtttcccctgagctgtcgcttcagttaagatttcaaaccagcaagccacaaggctta
ctcttccttgcagccgggaaaaccgaccattgcctgatagaacttctgtcaggaatatta
caggtgaaaataaacatgggtacgggggaacagctcctcctttctgagcaaaaacttcgt
gtggacgatttggtttggcattcgttggagctgcgctatggcaaggatgctgttctcttg
gtcattgacaagcactacaagacaaccgtccagctggcgggtgggatgcgtaacttcacc
tttcaccatggaatctatataggaggtcgtggggggctcagtgtcccttacctggacagg
aagacccccaacttccggggatgcatggaggatgtggtgtttaaccagagggagatcctt
acgtcccttaggtcataccctggctttaagaaggtttctgaggtatcgctggggtgtagc
gatgagttttttgctgggaaggatgaagctattagctttttcagctctaggtcctatgtt
acctttccagaatggaaggtacacggggaagggttcctgagatttgctctgcaaactagg
accctgcaggctttgcttttatttcagtcgggcagaggaagagattttgttgccttggaa
atccatgagggtctactgaaggctcacataggaaggggtggaacaaaaactcaactctct
tcattcagcttggttagtgacaacaagtggcacattgttcagcttagagtcacagggagg
cacgtgaacatcatggtggatgaacacagggaaagggcggggctgcctctgcaaagccaa
gcatttgtatcggaaggacccctgttcgtgggtggcctggatgaccggatgtgggaaact
gtgcgcggcttagaagttgtgtctatgcctgggaaatctgttcgaggcatgtctctgaaa
ggatgcctgcgagccttagaagccaatttggaaaagagagcattacgggatgctcttgtc
tccagagacatttcggctgggtgcacaagcgagggtctccgtggtacagatccttctgtg
gcaggggaagacctgtttccaccagagccatcccctcccatgaccattcccagttctcct
ctgaaaaatcaaagtggcagctttttggttttgaataagttagaagtccaagaaggtgga
cgagccttactgggacaaaggcatatagaagtagatgtggacttcatggatctgggtatc
aattcttctcagatactgtttaagatacaggaaatgccaggtcacgggttccttcagata
gatgcttggcctgcacaggaaatggagaggacttttactctgtcagatttgaggggtggg
aaagtgtggtatgtccacgatggttcagaagagcccacagattcttttacgttttgggct
ttttctagtagcaagcaggcactgccgtcccagctgcaggctcctgttccacatgtgttt
aacattactgtccttccagtgaatgaccccccataccttaagctcccagaaggacacctg
cttctctttgagaacaccaagcaacgactaacgcccagtgtgatacaggtgttagatccc
gacacagattcttggcgtctcaggttttcggttcttaacaacttcaattcagaggctggg
tttttagaaaatgccagggagcccgggagagccatcactggttttacagacacggattta
caagatggcaacattttctatgtgcacaggggtcctcgaaactctcgggttgttctaagg
gcaactgatggtgagctggttagcaatactgtggtgttgcgggtcatggctgtcccttgg
gactttgaagtggctgacaggactggcgtggtggtaccacaaggtggtaccattcttatc
actcagagcaacttgtccgtgaaggtgaatggcggacaacatgagctggacactctctat
gacatcacacatccacctcggtttggccaaattcagcaccggggattcaacggagagtgg
aaaccagttaggaccttttctcaacgttccgttgaccagggtcagatccgatactatagt
tcattcaagggattgcatcaagaaaatgtgacggatcactttaagtttaaagttaacatc
gagggaagagtaggcagagagctcctgttccctgtgactgtgcagtggctgaagttgaca
cttctgaaaaatatccctctagagattagcaacgcaaacaagaaagtattggattctggt
catctgcaggctgcagcagggagtgtggcagtacctgagagggaactctatttcaagcta
ctgattccgcctaagaaaggaaaactgctacttggcaataaagttcttaaatccggttca
atgttcagtcaaaaaaacattacagactctaaggtaagctatgaacctcaggggatgccc
gggcaagactcacaggattcttttagtttctcaattgttgtaaaacacgtagaatctaaa
gatcatacctttaggatagaccttaaagcagataagacacacatcactataacaaacact
ggactgtatgttaaagagggagaaaggacaataattacaaaatcagaattatttgctcaa
acactggaccatcatgtcttccaatataaactcaccaagagtcctcagcatggggaactg
aaactggtcagctcgtctgcttctctgggaagtgacaatggggccactgaattcacagat
gaagacatagtgagtgggaggctggtctatgttcatgatgactctgagacccgggaggat
ggactcatccttctggcctctgccacaggtctgggccaacagggaggggtcagaagtctt
gactctgagcacacgtctacagagatcaaagtcagcgtttctgttgagttgaagaatgac
gagaagccagtgcgtgtggtagataagatctttcacgttgtgcgggacagccagcgctta
ctgacgctagcagatctctgttaccatgaccccgacatagattttgatgatggccagttg
ctctacactcggcatggcatacccaatggagatttggtgaaagctgctgacccagttcgg
aagctctaccagttcagacaagagggcctacgggaagggcgtgtgctcttcaggcaccat
ggtccagactccgctcggttcctgatttttgtgacagatggtgtccattacacgtcatcc
cttttcgaggtcagtgtgtcagaggcctatgtccgcatagtcaacaacacggggctgctt
gtgcacagagggagggacagctttctaacaacagccaacctgagcgtcaccacaaaccaa
gatgtcagaacagaccatgagtttgaattccacatcgtgcaacccccaaaacatggcaga
ctcctggtcaacaattctacctttcactcattttcccagcacgacctaaagcagggatgt
gtgatttataggtatgagggggatggcaacctcgatatctttaacctgacagtgaaagtt
aaagatgcctacctagatgtgagcatcagggtccaagtgtccttggaaggtcgccaacat
tccactccaattctgcacagtaggagccttatagttgaagaaggaaaaccagtaaaactg
agcagaggaaagctccaggctgggaatgaagaagatattccttcagaggcagtgttcaca
gtcagaactccacccgtatacggatacctccaaatatccacagcagaagacggcattgcg
ggtgcagatgtgacgcccactctgagcttcacccagcaggatgttgatgaaggccatgtc
ctctatgtccagacagcccctggccagcaaaaggaccagttcaccctcgatgtgacaaag
gactcccgggttgtaaggagagtggaggtgctcttggagctcatccccaagtggatccct
ctcaaggtgcagaatctcacagttcaagaagggggctccaaggtacttctgcaggatcag
ctccaaattgcaagcaagtatttggagagtcttgactgtgaatttgttctcctcgaaccg
ccaaagcacggttatgttgaaagctccaagtttccaagagtgaagctaatgaaattttcc
aggagagaggtggagcaggagttgatttactacgttcacgatggcagtgaggagtttctc
gacagcctcaccatcttggcgaacagctctgagctcgggaagcagagtctgcctcagact
ctgtttgtaactgttgagtctgtgaacgatgaggctccagtagtaacagccaataacatc
ctccaggtgtgggtgaattctgtcactgaggtgaccagaggggacctgtgtgcagaagat
ggggactcttccccacaggacttggtctactgggtcactcctcccagcaacgggcatctg
gctctcaagtccactcctggcagaaggatccagaacttcactcaggctcagattgatgag
ggtcagctggtgtttgtgcactctggagcaatgtcaggtggctttaatttccaggtgact
gacggtctgaattttgcgcctcggcaaatctttagcatcactgcccgagctctgatcatt
agcttagaagtcaacagaggattgagcatcttcccaggttccacaaagccactttcatct
catgacctgagagccgtgaccaatgatgacaaggcaggaaacagaactgtaacatttaca
gttgtcaggtcccctaggctcgggagactgctgaagatgaacccggataaccgcacagag
gacgtttccatttttacccaatgtctggtgagtgaagggctgatactctaccagcatgtg
gatcttgagagcacggggtgggcctcagaagactctttcacattcacagcatcttcccct
ccagtggagctgggccccgaggcttttcagatcaccatttcatatgaagtgaacgagtca
ggtcgacagagccggctgcgtgcaaatacaggagcctctgtcaaggaaggagataaagtt
ctcattgaccaatcaaaattagatgcctccaacctcttacttcagctaccccaacctcag
cgttcttcccatgagatctggttccaggttacggctcttcctcaccatggaaccattatg
gttggagagagaaacattaccacgggaagaccctacttctcccagcacacagttaatgta
tttggagccacgtatcttcatgatgactctgaatcactggctgataattttacctttgct
gtttggccaaacccaaagaaccagtccaccagcaagccagaggctggctttctggaagag
atgttcaacatcaccatcacccctgtgaatgatcagcctccagaattaaagaccaaaggg
ctgcggctgacagttctgcagggcgataggttggttatgggacctgaaatcctcaatgta
gaagatatagatagtcctccaagtgaaatccaatatgagatcatccgtcatcccaacaat
ggcttcttagccatggctcacgatccagatgcccctgctcaccattttacacaggcggac
atcaataacgctcgggtgtggttcatacaggatagaagcccatcctctggagtgttttat
tttagtgtgaccgacggcaaacaccgccctctctacaagctcttccacctggatgtcacc
cccatttccatcactcttgtgaacctcacagacctgcttctcccacaaggccagaacact
gtccccatcaccaacactcacctttcagcagtgaccaatggtaggagcctccagatcatc
tacagagtgacacagcccctccaaagcggccacttgctgattgaaaaccaggtggtcaac
agctttgggcaggaggatttggactctggaagactctcttaccacatgaccaatctcaca
gcctccggagatcagctgaggttctcactgcttacaacagagtgcaacttgacggagcag
accctgaacatcagggtgcagcctttgttgtgggttatagcaaacctgaaagtgaccaac
agagtggctcaccagcttaggacagaggatctagatgcaaccgagcttgctaacaggact
aatagtgatcccatgtttgaagtgatacaacccctagtccatggacgacttgttcgaaga
gcagtagacagccctgtgatggaagaggtcactcagttcacccagacagacatcaaccaa
gggcagctggtgcttgagccacaggctaatctaacaggcacccgcacactgaatgactcc
ttcaccttcttgctcagcgcagaccatgtgcagccagcaacaggttatctagcctttacc
atagtgccaccagaccccttacctttacagacatttacaccagatgtgcctttatttgtc
accggagagaccctcgtggcctctgttttctctcagaaaaaacttagggcttctattaaa
aaacagacagaaattccagggaatctgacccagggcagatggcaggggacagattcctgg
ggtcaactcagtagcaaagagccaaatatagatgccaaggtctctcccaccagggtcatt
tggccatatgctgccaccaaagtgggggagtctctttctgggggagccatgcagccggaa
atgagccgtcaccctctggtggtcatcatacctttggctgctgtgttcctcctcctgctg
gtgactgtggtggtcctgtgtgtttggctactgagccgaaaggaggacaaacccaaatca
cttatccagccaaagacaaacccgaagtccccatccacaggctctagagcagagaggagt
ggagccattcccacggtcacggtgacaccccttattagaagctccagcagcctggctccc
agtctgttccggacccaatcatatgatgggccagccctctgggggcggagcctatggaga
aatgtgctccttgggactcgtgggtga
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integrated database retrieval system
