Mus caroli (Ryukyu mouse): 110309079
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Entry
110309079 CDS
T05910
Symbol
Fdft1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal00100
Steroid biosynthesis
mcal01100
Metabolic pathways
Module
mcal_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
110309079 (Fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
mcal01006
]
110309079 (Fdft1)
Enzymes [BR:
mcal01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
110309079 (Fdft1)
Prenyltransferases [BR:
mcal01006
]
Terpene biosynthesis
Squalene/phytoene synthase
110309079 (Fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
NAD_binding_9
Motif
Other DBs
NCBI-GeneID:
110309079
NCBI-ProteinID:
XP_021037136
Ensembl:
MGP_CAROLIEiJ_G0019401
UniProt:
A0A6P5R1N7
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Position
14:complement(54304708..54333684)
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AA seq
416 aa
AA seq
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MEFVKCLGHPEEFYNLLRFRMGGRRNFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA
LDGDIRHAVCVFYLVLRALDTVEDDMSISVEKKIPLLCNFHTFLYDPEWRFTESKEKDRQ
VLEDFPTISLEFRNLAEKYQTVIDDICHRMGCGMAEFVDKDVTSKQDWDKYCHYVAGLVG
IGLSRLFSASEFEDPIVGEDIECANSMGLFLQKTNIIRDYLEDQQEGRKFWPREVWGRYI
KKLEDFAKPENVDVAVQCLNELITNALQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATL
AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTK
QVISNIRTQNLPNCQLISRSHYSPIYLSFIMLLAALSWQYLSTLSQVTEDYVQREH
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtcaagtgtttaggccacccggaggagttctacaacctgctgcgattccgc
atgggaggtcggcggaattttatacccaagatggaccaggactcactcagcagcagcttg
aagacctgctacaagtatctcaatcagaccagtcgcagctttgccgcggttatccaggcg
ctggatggggacatacggcacgccgtgtgtgtgttttacctggttctccgagccctggat
acagtggaggatgacatgagcatcagtgtggagaagaagatcccactgctgtgtaacttc
cacactttcctctatgaccctgagtggcggttcactgagagcaaggagaaggaccgacaa
gtgctggaggacttccccacgatctccctggagtttagaaatttggctgagaaataccaa
acagtgatcgatgacatctgccacaggatggggtgtgggatggcagaatttgtagacaag
gatgtgacctccaaacaggactgggacaagtactgccactacgttgctgggctggtggga
attggcctttctcgtctattctctgcctcagagtttgaagaccccattgttggtgaagac
atagaatgtgccaactcaatgggtctgttcctgcagaaaacaaatatcattcgtgattat
ctggaagaccaacaggaaggaaggaagttttggcctcgggaggtgtggggcagatacatt
aagaagctggaagactttgctaagccagagaacgtagatgtggccgtgcagtgcttgaat
gaactcataaccaacgccctacagcacatccccgacgtcctcacctacctgtcacggctc
cggaaccagagtgtgtttaacttctgtgctattccacaggtaatggccattgccacactg
gctgcctgttacaataaccagcaggtattcaaaggagtagtgaagattcggaaggggcaa
gcagtcaccctcatgatggatgccaccaacatgcctgccgtcaaagctatcatataccag
tacatagaagagatttatcaccggatccccaactcagacccatcatcaagcaaaaccaag
caggtcatctccaacatcaggacacagaaccttcccaactgccagctcatctcccgaagc
cactactcccccatttacctgtcatttatcatgctcttggctgccctgagctggcagtac
ctgagcaccctgtcccaggtcacagaagactatgtccagagagaacactga
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