Mus caroli (Ryukyu mouse): 110309104
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Entry
110309104 CDS
T05910
Symbol
Pbrm1
Name
(RefSeq) protein polybromo-1 isoform X8
KO
K11757
protein polybromo-1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110309104 (Pbrm1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110309104 (Pbrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110309104 (Pbrm1)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110309104 (Pbrm1)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110309104 (Pbrm1)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
110309104 (Pbrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110309104
NCBI-ProteinID:
XP_021037176
Ensembl:
MGP_CAROLIEiJ_G0019064
UniProt:
A0A6P5QYW9
LinkDB
All DBs
Position
14:23332406..23437500
Genome browser
AA seq
1689 aa
AA seq
DB search
MGSKRRRATSPSSSVSGDFDDGHHSVPTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTLADGSSPG
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMTKSSLRIR
TASNLAAARLTGPSHNKSSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
LAAARYEEGESEAESITSFMDVSNPFHQLYDTVRSCRNHQGQLIAEPFFHLPSKKKYPDY
YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
QAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGR
RLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMMEDMKLMFRNARHY
NEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSRKSGVSPKKSKYMTPMQQ
KLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQD
IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQE
LIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVESNRYRRLDLF
QEHMFEVLERARRMNRTDSEIYEDAVELQQFFIRIRDELCKNGEILLSPALSYTTKHLHN
DVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGTTGLSGLHRTYSQDCSFKNSMYHV
GDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKS
DYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPI
SSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSDDNRAEDNFNLEKEKEDVPVEMSN
GEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPE
ETEHEPTKMFYKKEVFLSNLEETCPMSCILGKCAVLSFKDFLSCRPTEIPENDILLCESR
YNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIIPQKEPSPLLEKKIQLLEAKFAELE
GGDDDIEEMGEEDSEVIEPPSLPQLQTPLANELDLMPYTPPQSTPKSAKGSAKKESSKRK
INMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEERAAKVAEQQE
RERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLNQQLTPVAGMMGGYPPGLPPLQGP
VDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAPMVGTPAPGGSPYGQQ
VGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLLHSEAYLKYIEGLSAE
SNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLRDTLNI
RQAYNLENV
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgggttccaagagaagaagagccacctctccttccagcagtgtcagtggagactttgat
gacgggcaccattctgtgcctacaccaggcccaagcaggaaaaggagaagactgtccaat
cttccaactgtagatcctattgctgtgtgccatgaactctataacaccatccgagactat
aaggatgaacagggcagactcctctgtgagctgttcattagggctccaaagcggagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaa
cttaaaatggaagagtatgatgatgttaatctactgactgctgacttccagctgcttttt
aacaatgcaaaggcctactataagccagattcccctgagtataaagctgcttgtaaactc
tgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagacgatgaa
gatgatgatgaagatgggcaagacaatcaaggcacgctggctgatggctcttctccaggt
tacctgaaggagatcctggagcagcttcttgaagccatagttgtagccacaaatccatca
ggacggctcatcagtgaactttttcagaaactgccttccaaagtgcaatatccagactat
tatgcaataattaaggaacctatagatctcaagaccattgctcagaggatacagaatgga
agctacaaaagtatacacgcaatggccaaagatatagatcttctagcaaaaaatgccaaa
acatataatgagcctgggtctcaagtattcaaggatgccaattcgattaaaaaaatattt
tatatgaaaaaggcagaaattgaacatcatgaaatgactaaatcaagtcttcgaataagg
actgcatcaaatttggctgcagccaggctgacaggtccttcgcacaataaaagcagcctt
ggtgaagaaagaaaccccactagcaagtattaccgtaataaaagagcagtccaagggggt
cgcttgtcagcaattaccatggcacttcagtatggctcagagagtgaagaggacgctgct
ttagctgctgcacgctatgaagaaggggaatctgaagccgagagcatcacttccttcatg
gatgtttccaacccctttcatcagctttacgacacagttaggagctgtcggaatcaccaa
gggcagctcatagctgaacctttcttccatttgccttcaaagaaaaaatacccagattat
tatcagcaaattaaaatgcccatatcacttcaacagatcagaacaaagctaaagaaccaa
gaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaa
cgttataacgttcccaattcagccatctataagcgagttctaaaactgcagcaagtcatg
caggcaaagaagaaggagcttgcgaggagagatgacattgaggacggagacagcatgatc
tcctcagccacttctgacactggtagtgccaaaaggaaaagtaaaaagaacataagaaaa
cagcgaatgaaaattttattcaacgttgttcttgaagctcgagagccaggttcaggcaga
agactttgcgatctatttatggttaagccatccaagaaggactatcctgattattataaa
atcatcttagagccaatggacctgaaaataattgagcataacatccgaaatgacaaatat
gcaggtgaagaaggaatgatggaagacatgaaactcatgttccgcaatgccaggcactac
aatgaggagggctcccaggtatacaatgatgcccatatcctggagaagttactcaaagat
aaaaggaaagagctgggcccattgcctgatgatgatgacatggcttctcccaaacttaaa
ttgagtcggaagagtggtgtttctcctaagaaatcaaagtacatgactccaatgcagcag
aaactaaatgaagtgtatgaagctgtaaagaactatactgataagaggggtcgccgcctt
agtgctatatttctaagactcccctctagatcagagctgcctgactactacctgaccatt
aaaaaacccatggacatggaaaaaattcgaagtcacatgatggcaaacaagtaccaagat
atagattctatggtagaggactttgtcatgatgtttaataatgcctgtacctacaatgaa
ccagagtctttgatctacaaagatgcccttgtactgcataaagtcctccttgaaactcgg
agagacctggagggagatgaagattctcatgtccctaatgtgacattgctgattcaagaa
ctcatccataatctttttgtgtcagtcatgagtcatcaggacgatgaaggaagatgttac
agcgactccttagcagagattcctgctgtggatccaaactttcccaataagcctcccctt
acatttgacattatcaggaaaaatgttgaaagtaatcgatatcggcgactcgatttattt
caggagcatatgtttgaagtattggaaagggcaagaaggatgaaccggacagattctgaa
atatatgaggatgcggtagaacttcagcagttttttattagaattcgtgatgaactctgc
aaaaatggagagatccttctttctccagcactcagctataccacaaaacacttgcataac
gatgtggaaaaagaaaaaaaggaaaaattgcctaaagaaatagaggaagataaactaaaa
cgcgaagaagaaaaaagagaagctgaaaaaagtgaagattcctcaggtactacaggactc
tcaggcttacatcgtacatacagccaggactgcagctttaagaacagcatgtatcatgtc
ggagattatgtctatgttgaacctgcggaggccaatctacaaccacatatagtgtgtatt
gagagactgtgggaggattcagctggtgaaaaatggttgtatggctgttggttttatcgg
ccaaatgaaacattccatttggctacacgaaaatttctagaaaaagaagtttttaagagt
gactactacaataaagtacctgttagtaaaattctaggcaaatgtgtagtcatgtttgtc
aaggaatactttaaattatgtccagaaaactttcgcgatgaggatgtttttgtctgtgaa
tcgaggtattctgccaaaaccaagtcttttaagaaaattaaactgtggaccatgcccatc
agttcagttagatttgtccctcgggatgtgcccttgcctgtggttcgagtggcctctgta
tttgcaaatgcagataaaggggatgatgagaagaatacagacaactcagatgacaatcga
gctgaagacaattttaacttggaaaaggaaaaagaagatgttcctgtggagatgtccaac
ggtgagccaggttgccactactttgagcagcttcggtacaatgacatgtggctgaaggtt
ggtgattgtgttttcatcaaatctcacggcttggtgcgccctcgtgtgggcagaattgag
aaagtatgggtccgagatggagctgcatatttttatggccctatcttcattcatccagaa
gaaacagaacatgagcccacaaaaatgttctacaaaaaagaagtgtttctgagtaatctg
gaagagacctgccccatgagttgtattctggggaaatgtgcagtgctgtcattcaaggac
ttcctctcctgcaggccaactgaaataccagaaaatgatattctgctttgtgagagccgc
tataatgagagtgacaagcagatgaagaagttcaagggtttgaagaggttctcactctct
gctaaagttgtagatgatgaaatttactacttcagaaaaccaatcattcctcagaaggaa
ccctcacctttgttagaaaagaagatacaattgctagaagctaaatttgcggagttagaa
ggaggagatgatgatattgaggagatgggagaagaggatagtgaagtcattgaacctcca
tctctacctcaacttcagacacccctggccaatgagttggacctcatgccctatacaccc
ccacagtctaccccaaagtctgccaaaggcagtgcaaagaaggaaagttctaaacgaaaa
atcaacatgagtggctacattttgttcagcagtgaaatgagagctgtgattaaagcccag
cacccagattactcttttggggagctcagcagactggtggggacagaatggagaaacctt
gaaacagccaagaaagcagagtatgaagagcgggcagctaaagttgctgagcagcaggag
agagagcgagcagcacagcaacagcagccgagtgcttctccccgagcaggcacccctgtg
ggggctctcatgggggtggtgccaccaccaacaccaatggggatgctcaatcagcagttg
acacctgttgcaggcatgatgggtggctatccgccaggccttccacctttgcagggccca
gttgatggccttgttagcatgggcagcatgcagccacttcaccctggggggcctccacct
caccatcttccgccaggtgtgcctggcctcccaggcatcccaccaccgggtgtgatgaat
caaggagtagcccccatggtagggactccagcaccaggtggaagtccatacggacaacag
gtaggagttttgggacctccagggcagcaggcaccacctccatatcctggtcctcatcca
gctggcccccctgtcatacagcagccaacaacgcccatgtttgtggctcccccaccaaag
acccaaaggcttctccactcagaggcctacctgaaatacattgaaggactcagtgctgaa
tccaacagcattagcaagtgggaccaaactttggcagctcgaagacgggatgtccatttg
tccaaagaacaggagagccgcctaccttctcactggctcaaaagtaaaggggcacacacc
accatggcagatgccctctggcgcctgcgggatttaatgcttcgagacactctcaacatc
cgacaggcatacaacctagaaaatgtttaa
DBGET
integrated database retrieval system
