Mus caroli (Ryukyu mouse): 110309173
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Entry
110309173 CDS
T05910
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110309173 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110309173 (Prpf40a)
Spliceosome [BR:
mcal03041
]
Complex A
U1 snRNP components
U1 related factors
110309173 (Prpf40a)
Complex B
110309173 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
110309173
NCBI-ProteinID:
XP_021037306
Ensembl:
MGP_CAROLIEiJ_G0023561
UniProt:
A0A6P5QZQ6
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All DBs
Position
2:complement(48454718..48506825)
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AA seq
972 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSSSWVS
ADGFLRRRPSMGHPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQ
DLSADLSSNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRV
PSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQR
FLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKR
NWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALE
KEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNM
LGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISS
TKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDA
VWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKR
SRSRSGSDSDDDDSHSKKKRQRSESHSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDS
PESDTEREKDKKEKDRESEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKR
RRTLLEQLDDDQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcagtggccgccgacggagcagtctgagcccgacgatgaggccggggact
ggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacctccctcgcggggt
cccggggacggggagcggagattgtccggctcaaacctgtgctccagttcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctagcatgcattatgcacca
atgggcatgcaccctatgggtcagagagcaaacatgcctcctgtgcctcatggaatgatg
ccacagatgatgccccctatgggagggcctccaatgggacaaatgcctggaatgatgtct
tcggtaatgtcaggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgcctggagtaaatagtatggatgtagcagcaggtgcagcatctggtgcaaaatcaatg
tggacagaacataaatcacctgatggaaggacttattattacaatactgaaacaaaacag
tctacctgggaaaagccagatgatcttaaaacacctgctgagcaactgttgtctaaatgc
ccatggaaagagtacaaatctgattccgggaagccttattattataattctcaaacaaag
gagtcccgctgggccaaacctaaggaacttgaagatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaagaaagc
agcaagcaagaagaatgtactacagcatcaacagccccagttcctacaacagaaattcct
actactatgagcaccatggctgctgcagaagcagcggctgctgttgttgcagctgcggca
gctgctgccgcagcagctaatgccaatacttccaccacacctactaatactgtgggaagt
gttccagttgctcctgaacctgaagttacttccattgttgctactgctgtagataatgaa
aatacagtaactgtatcaactgaagagcaagcacagcttgctaataccacagctattcaa
gatctcagtgctgatctatccagtaacactggagaggaaccagctaaacaagaaactgtc
tctgattttactcctaaaaaagaagaggaagagagccaaccagcaaaaaaaacatatact
tggaatacaaaggaggaggcaaagcaagcatttaaagaattattgaaagaaaagcgggtg
ccctccaatgcttcatgggagcaggctatgaaaatgatcattaatgatcctcggtacagt
gctttagcaaagctgagtgagaaaaagcaggcctttaatgcttataaagtccagacggag
aaagaggaaaaagaagaagcaagatcaaaatacaaagaagctaaggaatcttttcagcgt
tttcttgaaaatcatgaaaaaatgacttctacaaccagatacaaaaaagctgagcaaatg
tttggggagatggaagtttggaatgcaatatcagagcgtgatcgtctagaaatctatgaa
gatgttttgttcttcctttcaaagaaagaaaaggaacaagcaaagcagctacgaaagaga
aattgggaagccttaaaaaacatccttgacaatatggctaacgttacatactccaccact
tggtctgaggcccagcagtatctgatggataatccaactttcgcagaggatgaagagctg
cagaacatggataaagaagatgcattaatatgctttgaggaacacatccgggctttagaa
aaggaagaagaagaagaaaaacagaagactttgttgagagaaaggaggaggcagcgtaaa
aatagggaatcttttcagatctttctagacgagttgcacgagcatgggcagctgcactct
atgtcctcttggatggagctgtatcccaccatcagctctgacattcgcttcactaacatg
ctgggtcagccggttttttcattaggatcaactgcacttgatcttttcaagttttatgtt
gaagatcttaaagcacgatatcatgatgaaaagaagataataaaagacattctgaaggat
aaaggatttgtagttgaagtaaacactacttttgaagattttgtggcaataatcagttca
accaagagatcaactactttggatgctggaaatatcaagttggctttcaatagtttacta
gaaaaggcagaagcccgtgaacgtgagagagaaaaagaagaggctcggaaaatgaaacgg
aaagagtctgcctttaagagtatgttgaaacaggctacccctccaatagaactggatgct
gtctgggaagatatccgggaaagatttgtaaaggaaccagcgtttgaggatataactcta
gaatcagaaagaaaaagaatatttaaagatttcatgcatgtgcttgagcatgaatgtcag
catcatcattcaaagaacaagaaacattctaagaaatctaaaaaacaccataggaaacgt
tcccgctctcgatcgggatcggattcagatgatgatgacagccattcaaagaaaaaaagg
cagcggtcagaatctcactctgcttcggagcattcttccagtgctgagtctgagagaagt
tacaagaaatcaaaaaagcataagaagaaaagcaaaaagaggagacataaatctgactct
ccagaatcagatactgaacgagaaaaggataaaaaagaaaaagatcgggaaagtgaaaaa
gacagaagtagacagagatcagaatcaaaacacaaatcacctaagaaaaagactggaaag
gattctggtaactgggatacttctggcagtgaactgagtgaaggggaattggaaaagcgc
agaagaacccttttggagcaactggatgatgatcaataa
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