Mus caroli (Ryukyu mouse): 110309577
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Entry
110309577 CDS
T05910
Symbol
Pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
110309577 (Pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcal01009
]
110309577 (Pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcal04515
]
110309577 (Pcdh20)
Protein phosphatases and associated proteins [BR:
mcal01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110309577 (Pcdh20)
Cell adhesion molecules [BR:
mcal04515
]
Cadherins
Protocadherins
110309577 (Pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
110309577
NCBI-ProteinID:
XP_029324546
Ensembl:
MGP_CAROLIEiJ_G0019553
UniProt:
A0A6P7QE94
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All DBs
Position
14:complement(79408569..79414272)
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AA seq
952 aa
AA seq
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MRGRRNARSSLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLPHVFLLFLFVGPFNCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQNQQLLHPERTASEGNPPLSFS
LASGGLSGQYVTLNNRSGELHTSAQEIDREALCLDGGGGAAWGGSISIASSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVWVPENSPVNTRLAIEHPAVDPDV
GINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPP
LLGSATLTIGISDINDNCPLFIDSQINVTVYGNATVGTPVATVQAVDRDLGTNAQITYSY
SQKVPQETKDLFHLDEVTGVIKLSSKIGGSVLQAHKLTILANGPGCIPAVITALVSIIKV
VFRPPEIVPRYIANEVDGVVYLKELEPVHTPIAFFTIRDPEGKYKINCFLDGEGPFRLAP
YKPYNNEYLLETTKPMDYEVQPFYEIAVVAWNSEGFHVKRIIKVQLLDDNDNAPVFLQPL
IELTIEENNAPNAFLTKLYATDADSGEMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDR
EEKEKYRYTVRAVDCGTPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVESISCMPTLVALSVISLG
SITLVTGMGIYICLRKGKKHHREDDNLEVQIPLKGKIDLCMRERKPVDISNI
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggccgacggaacgcgcgcagctcgctggtccaggcagtgagcttgcgcccggcg
acctggcacccgtgcctggatatggggcatctacatcgtcccagcagcaggaccagccac
aggaacctgccgcatgtttttctgcttttcctcttcgtgggacccttcaattgcctcgcg
agttacagccgtgcaaccgagcttctgtacagcctaaatgagggactgcccgcgggagtg
ctcataggcagcctggcagaggacctgaggctgctgcctcgggcctctgggagacagaac
cagcagttgttgcatccagagcgcactgcctctgaggggaacccccctctctctttcagc
ttggcctccgggggactgagtggccagtatgtgaccctaaacaaccgctccggcgagctg
cacacttctgcacaggagatcgacagagaagcattgtgcctggatgggggcggtggggct
gcctggggcggcagtatctccattgcctcctctccatcttctgactcttgccttttgctt
ctggacgtgctggtcctgcctcaggaatattttaggtttgtgaaggtgaaaattgccatc
agggatatcaatgacaatgctccacagttccccatttctgaaatctccgtttgggtccca
gaaaattcacctgtaaatacccgattggcaatagagcatcctgctgtggaccctgatgta
ggcattaacggtgtgcagacctatcgtttactagactaccatggcatgtttaccctggac
gtggaggagaatgagaatggggagcgcacaccctacttgattgtcatgggcgctttggac
agagaaacccaggaccagtatgtgagcatcatcatagctgaggatggtgggtctccacca
ctgctgggcagtgccaccctcaccattggcataagtgacattaatgacaattgtcctctc
tttatagactcacaaattaatgtcaccgtttatggaaatgctacagtgggcaccccagtt
gcaacagtccaggctgtggatagagacttggggacaaatgcacagatcacttacagttac
agccagaaagttccacaggaaaccaaggatttattccacctggatgaagttactggagtc
attaagctttccagtaagattggtgggagtgttctacaggcacataagctcaccatccta
gctaatggacctggctgtatccctgcagtgatcactgctcttgtatcgatcatcaaagtc
gttttcagacccccagaaatcgtcccacgttatatcgcaaatgaggtggatggtgttgtg
tatctgaaagaactggagcctgttcatactccaattgcgttttttaccatcagagatccg
gaaggtaaatacaagattaactgcttcttggatggtgaagggccattcaggctagcaccc
tacaagccgtacaacaatgaatatttgttggagaccacaaagcctatggactatgaagtg
cagcccttctatgaaatagctgtagtggcctggaactcagagggatttcatgtcaagaga
atcattaaagtacaacttttagacgacaatgacaatgcccctgttttccttcagcccttg
atagaactgaccattgaagaaaacaatgcacccaatgcctttctgacaaagctctatgct
acagatgctgacagtggagagatgggacgcgtttcctacttcttgggacctgatgctccg
tcatacttttccttagacagtgtcacggggattctgacagtttctactcagctggacaga
gaagagaaagagaagtacaggtacactgtccgagcagtggactgtgggacgccacccaga
gaatcagtggctacagtggccctcactgtgttggataaaaatgacaacagtccgaggttc
atcaacaaggacttcagcttttttgtcccagaaaactttccgggatatggtgaaattgga
gtcatcagtgtaacagatgccgatgctgggaggaacggatgggtagccctctccgtaatg
aaccagagtgatatttttgtcatagacacaggaaagggtatgttgagagctaaagtctct
ttagacagagaacagcaaagctcttacactctgtgggtggaggctgttgacgggggtgag
ccagccctttcctctaccacaaaaatcacaattcttcttctggacatcaacgataaccct
cctcttgttttatttcctcaatctaatatgtcttatttgctggtcctaccttctactctc
cctggctcaccagtaacagaggtctatgcggttgacaaagatacaggcatgaatgctgtc
atagcttatagcatcatagggagaagaggtcccaggcctgagtctttcagaattgacccc
aagactggcaacatcactctggaggaagccttgcttcagacagattatgggttgcatcgc
ttactggtgaaagtgagtgatcacggataccccgagcctctccactccacagtcatggtg
aacttatttgtcaatgacactgtcagtaacgaaagctacattgagagccttttgagaaag
gagccagaaattaatatagaagagaaagaaccacaaatctcaatagagccaactcatagg
aaggtagaatctatatcctgtatgcccacattggtagctctgtcagtcataagcttgggc
tccatcacactggttacggggatgggaatatacatctgcctacggaaaggtaaaaaacat
cacagggaagatgacaatttggaagtacagattccattgaaaggaaaaattgacttgtgc
atgagagagagaaaaccagtggatatttctaacatttga
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