Mus caroli (Ryukyu mouse): 110310030
Help
Entry
110310030 CDS
T05910
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110310030 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110310030 (Prpf40b)
Spliceosome [BR:
mcal03041
]
Complex A
U1 snRNP components
U1 related factors
110310030 (Prpf40b)
Complex B
110310030 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
SelB-wing_2
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
110310030
NCBI-ProteinID:
XP_021038397
Ensembl:
MGP_CAROLIEiJ_G0020263
UniProt:
A0A6P5R7Q3
LinkDB
All DBs
Position
15:92998155..93020473
Genome browser
AA seq
892 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVKQESAGKQQTQQLQTLQPQPPQPQPDPPPIPPGPIPVPMALLEP
EPGRSEDCDVLEAAQPLEQGFLQREEGPSSSTGQHRQPQEEEEAKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKE
DALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQLHSMSTWME
LYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLR
QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKH
GRKGKKHHRKRSHSPSGSESDEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAA
LGGPGSPSSHLLLGSDHGLRKTKKPKKKTKKRRHKSTSPDSETDPEDKVGKESEDREQEQ
DREPRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggctcccacctccttttcctccg
atggggctcccccctatgagtcagagaccaccagccattccccccatgccacctggcata
ctgcccccaatgcttccaccaatgggggcaccgccaccacttacacagataccaggaatg
gtccctccgatgatgcccgggatgctgatgccagcggtgcctgtcactgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctggaacaggccctccgagggccttatgg
agtgaacacgtggcccctgacgggcgcatctactactacaatgctgatgataagcaatcc
gtgtgggagaagcccagcgtactcaagtctaaggcagagctgctgctgtcccagtgtccc
tggaaagagtataagtcagacacagggaagccttactactacaacaaccagagtcaggag
tctcgttggactcggcccaaggacctggatgacctggaagccctagtcaaacaagagtct
gcaggaaaacagcagacccagcaactacagacactacagccacaaccacctcagccacag
cctgaccctccacctatacctccgggtcccatcccagtgcctatggccctcctggaacct
gaaccaggtcgaagtgaagactgtgatgtgctggaggctgcccagcccctggagcagggc
ttcctgcagcgggaggagggccccagcagctctactggacagcatcggcagccacaggaa
gaggaggaagctaagccagaaccagagcgatctggcctcagttggagcaaccgggagaag
gcgaaacaggctttcaaagaactgctaagggacaaggctgtcccttccaatgcttcatgg
gaacaggccatgaagatggtagtcactgacccccgctacagtgccttgcccaaactaagt
gagaagaagcaggcgtttaatgcttacaaggctcagcgggagaaggaggagaaagaggag
gcccggctgcgagccaaggaggccaagcagactctgcagcatttcctggaacagcatgaa
cgcatgacctccaccacccgctaccggcgggcagaacagacttttggggacctggaggtc
tgggctgtggtccctgagagagatagaaaagaagtttatgatgatgtcctcttcttcctg
gccaagaaggagaaggaacaagccaagcagctccggcgtcggaatatccaggccctgaag
agcatcctggatgggatgagcagtgtcaacttccaaaccacttggtcccaggcccagcag
tacctcatggataaccccagctttgctcaggaccagcagctacagaacatggacaaggaa
gatgcacttatctgctttgaggagcatatccgggctttggagagagaggaggaggaagag
cgggaacgagcccggcttcgggagcggcgacagcagcggaagaatcgggaggcctttcag
agcttcctggacgagctgcatgagacagggcagctgcactccatgtccacctggatggag
ctgtacccggcagtcagcactgatgttcgatttgccaacatgctgggccagccgggctct
actcctttggacttgttcaagttctatgtggaggagttgaaggctcgattccacgatgag
aagaagatcataaaggatatccttaaggaccggggcttctgtgtggaggtgaacacagca
tttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggacgcaggc
aacatcaagctgaccttcaatagtctgctggaaaaagcagaggcacgggagagggaacgg
gaaaaggaggaggcccgaaggatgcggcgcagagaagctgcctttcgaagcatgctgagg
caggccgtgcctgctctggaactgggcactgcctgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttccgagag
ttcctgcaggtgttggagcagactgaatgccagcacctccacaccaaaggccgaaagcat
ggcagaaagggcaagaaacaccatcgcaagcgttcacactcgccctcaggctctgagtcg
gatgaagaggagctgcctccaccatccctccggccccccaagcggaggaggcggaacccc
tcagaatctggctctgagccctcctcctcacttgattcagttgaaagtgggggtgctgct
cttggaggaccaggctccccatcttcccaccttcttcttgggtcagatcatggtcttcgg
aaaaccaagaaaccaaaaaagaaaaccaagaaaagaagacacaagtcgaccagtcctgat
agtgagacggaccccgaagacaaagttggtaaggagagtgaagacagagaacaggaacag
gacagggaaccccggcaggcagagctccctaaccgttccccaggcttcggaatcaagaag
gagaagacaggctgggacacatcagaaagcgagctgagtgagggggagctggagaggcga
aggcgaacactcctacagcagctggacgaccaccaatga
DBGET
integrated database retrieval system
