Mus caroli (Ryukyu mouse): 110310133
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Entry
110310133 CDS
T05910
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04151
PI3K-Akt signaling pathway
mcal04510
Focal adhesion
mcal04512
ECM-receptor interaction
mcal04518
Integrin signaling
mcal04974
Protein digestion and absorption
mcal05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110310133 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110310133 (Col2a1)
04518 Integrin signaling
110310133 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110310133 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110310133 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
110310133 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcal00536
]
110310133 (Col2a1)
Glycosaminoglycan binding proteins [BR:
mcal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110310133 (Col2a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
110310133
NCBI-ProteinID:
XP_021038488
Ensembl:
MGP_CAROLIEiJ_G0020219
UniProt:
A0A6P5R2M3
LinkDB
All DBs
Position
15:complement(91662929..91692409)
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AA seq
1487 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIAAVLRCQGQDAQEAGSCLQNGQRYKDKDVWKPSSCRICVCDTG
NVLCDDIICEDPDCLNPEIPFGECCPICPADLATASGKLGPKGQKGEPGDIKDIIGPKGP
PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLSAGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPAGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGETGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGLRG
LPGTPGTDGPKGSPGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGANGNPGPAGPPGPAGKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPG
DDGPSGLDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVG
PPGSPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADTTLRQHDVEVDATLK
SLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcgctggtgctgctgacgctgctcatcgccgcggtc
ctacggtgtcagggccaggatgcccaggaggctggcagctgtctgcagaatgggcagagg
tataaagataaggatgtatggaagccctcatcttgccgcatctgtgtgtgtgacactggg
aatgtcctctgcgatgacataatctgtgaagacccagactgcctcaaccccgagatcccc
ttcggagagtgctgtcccatctgcccagctgacctcgccactgccagtggaaaattaggg
ccaaaggggcagaaaggagaacctggagacatcaaagatatcataggacccaaaggacct
cctggccctcagggacctgccggtgaacaaggacccagaggtgatcgtggtgacaaggga
gaaaagggtgcacctggaccccgtggcagagatggagaacctggtacccctggaaatcct
ggccccgctggccctccaggtccccctggtccccctggccttagcgcaggaaacttcgcg
gcccagatggctggagggtttgacgagaaggctggtggtgcccagatgggagtcatgcaa
ggccccatgggccccatgggaccccgtggacccccaggccctgccggtgcccccggccct
caaggatttcaaggcaatcctggtgaacctggcgagcctggtgtctctggtcccatgggt
ccccgaggtcctcctggccctgctggaaaacctggtgacgacggtgaagctgggaagccc
ggaaagtctggggaaagaggcctccctggccctcagggtgctcgtggattcccgggaacc
ccgggtctccccggtgtcaagggtcacagaggttacccaggccttgacggtgctaaggga
gaagctggtgctccgggtgtgaagggtgagagtggttcccctggtgagaacggatccccg
ggcccaatgggtccccgtggcctgcctggcgagagaggacggactggccctgctggtgct
gctggtgctcggggtaacgatggccagccaggccccgctggacctccgggtcctgtgggt
cccgcaggtggtcctggcttccctggtgctcctggtgccaagggagaagctggtcccaca
ggtgctcgcggtcctgaaggtgctcaaggttctcgtggcgagcctggcaatcctgggtcc
cctgggcccgcgggtgcttctggtaacccagggactgatggtattcctggagccaaaggg
tctgctggtgctcctggaattgctggtgcccctggcttccctgggccccgtggccctccc
ggtcctcaaggtgcaactggtcctcttggccccaaaggtcaggcgggtgagcctggcatt
gctggcttcaaaggtgaacaaggccccaagggagagactggacctgctgggccccaggga
gcccctggccctgctggtgaagaaggcaaacgaggtgctcgaggagagcctggtggtgct
ggaccaatcggaccccctggagagagaggtgctcctggcaaccgtggattcccaggtcaa
gatggtctggcaggtcccaagggcgcccctggagagcgagggcccagtggcttggctggt
cccaagggagccaacggtgacccgggtcgtcctggagaacctggtcttcctggagccagg
ggtcttaccggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cctggtgaagacggtcgccccggacctcctggtcctcagggagctcgtgggcagcctggc
gtcatgggtttccctggccccaaaggtgccaacggcgagcctggcaaagctggtgagaag
ggtctggctggtgctcctggtctgagaggtcttcctggaaaagacggtgagacgggagcc
gcaggaccccccggccccagtggacctgctggtgaacgaggcgagcagggcgctcctgga
ccatcaggcttccagggacttcctggccctcccggtcccccaggtgaaggtggaaagcaa
ggtgaccagggtattcctggtgaagctggagctcctggccttgtgggtcctcggggcgag
cgaggtttcccaggtgaacgtggctctcccggtgctcagggcctccagggtctccgaggc
ctccccggcactcctggtactgatggtcccaaaggttcacctggcccagatggcccccct
ggggctcaggggcctccaggtctacagggaatgcctggcgagagaggagccgctggcatc
gctgggcccaagggagacagaggcgatgttggtgagaaaggcccagagggagctcctggg
aaggatggcggccgaggtctgactgggccaatcggacccccaggcccagcaggggccaac
ggcgagaagggagaagtcggacctcccggcccgtcaggaagtactggagctcgaggtgcc
ccgggtgaacgcggagagactgggccacctggacctgctggatttgctggccctcctggt
gctgatggccagcctggtgccaagggtgatcaaggagaagccggacagaaaggagatgct
ggtgcccccggcccacaaggcccctcgggagcccctgggccacagggtcctactggagtg
actggtcctaagggagcccgaggtgcccaaggtcccccgggagccaccggattccctgga
gctgctggccgagttggacccccaggtgctaatggcaatcctggacccgccggtccccct
ggtcctgctggaaaagatggtcccaaaggtgttcgaggagacagtggcccccctggcaga
gctggtgaccccggtcttcaaggtcccgcaggagctcctggcgagaaaggagaacctgga
gatgatggtccctctggtcttgatggtcctccaggtccccaggggctggctggtcaaagg
ggcattgttggtctgcctggtcagcgtggtgagagaggattccctggccttcccggccca
tcgggtgagcccggcaagcagggtgcacctggcgcgtctggagacagaggtcctcctggt
cctgtggggcctcctggcctgacagggcctgcaggtgaacctggacgagagggcagccct
ggtgctgatggaccccctggaagagatggtgcagctggcgtcaagggagatcgtggtgag
actggagcactgggtgcccctggagctcctgggcccccaggctctcctggtcctgctggc
ccaactggcaaacaaggagacagaggagaggctggtgcacaaggtcctatgggtccctca
ggacctgctggagcccgtgggattgcaggccctcaaggcccccgaggtgacaaaggagaa
tctggagagcagggcgagaggggactgaagggacaccgaggtttcactggacttcagggt
ctgcctggccctccgggtccttctggagatcagggtgcttctggccctgctggtccttct
ggccctagaggtccacctggccctgttggtccctctggcaaagatggctctaatggaatc
cctggcccaattgggcctccaggtccccgtggacgctcaggagaaacaggccctgttggt
ccccctggaagccctggtcctcctggccctccaggtcctcctggtcctggcatcgatatg
tcagcctttgctggcttagggcagagagagaagggccccgaccccatgcagtacatgcgg
gctgatgaggcagacactaccttgagacagcacgatgtagaggtggacgctacactcaag
tcactgaacaaccagattgagagcatccgcagccctgacggctcccgcaagaaccctgct
cgcacctgccaagacctgaaactctgccaccccgagtggaagagcggagactactggatt
gatcccaaccagggctgcaccttggacgccatgaaagttttctgcaacatggagactggc
gagacttgcgtctaccccaacccagcgactgtccctcggaagaactggtggagcagcaag
agcaaggagaagaaacacatctggtttggagagaccatgaacggtggcttccacttcagc
tatggcgatggaaacctggctcccaacaccgctaacgtccagatgactttcctccgtcta
ctgtccactgagggctcccagaacatcacctaccactgtaagaacagcatcgcctacctg
gacgaagcggctggcaacctcaagaaggccttgctcatccagggctccaatgatgtagag
atgagggccgagggcaacagcaggttcacatacactgccctgaaggatggctgcacgaaa
cacactggtaagtggggcaagaccgtcatcgagtaccgatcacagaagacctcccgcctt
cccattattgacatcgcacccatggacattggaggggctgaacaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
