Mus caroli (Ryukyu mouse): 110310389
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Entry
110310389 CDS
T05910
Symbol
Cntn1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110310389 (Cntn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcal04515
]
110310389 (Cntn1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
mcal00537
]
110310389 (Cntn1)
Cell adhesion molecules [BR:
mcal04515
]
Immunoglobulin superfamily
Contactins
110310389 (Cntn1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
mcal00537
]
Others
110310389 (Cntn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Sp38
C2-set_2
ChitinaseA_N
Motif
Other DBs
NCBI-GeneID:
110310389
NCBI-ProteinID:
XP_021038969
Ensembl:
MGP_CAROLIEiJ_G0020187
UniProt:
A0A6P5R2T1
LinkDB
All DBs
Position
15:85895834..86189547
Genome browser
AA seq
1020 aa
AA seq
DB search
MKMPLLVSHLLLISLTSCLGDFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGK
VSLNCRARASPFPVYKWRMNNGDVDLTNDRYSMVGGNLVINNPDKQKDAGVYYCLASNNY
GMVRSTEATLSFGYLDPFPPEERPEVKVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF
ITMDKRRFVSQTNGNLYIANVESSDRGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY
PADIVVQFKDIYTMMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNI
QLEDEGLYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCIATGKPIP
TIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENAYGSIYANAELKILALAPTFEMNPM
KKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGG
IYTCFAENNRGKANSTGTLVITNPTRIILAPINADITVGENATMQCAASFDPALDLTFVW
SFNGYVIDFNKEITHIHYQRNFMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADL
VVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPI
IEGNMESAKAVDLIPWMEYEFRVVATNTLGTGEPSIPSNRIKTDGAAPNVAPSDVGGGGG
TNRELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDETMTPST
AFQVKVKAFNNKGDGPYSLVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWKHVLEKIVE
SYQIRYWAGHDKEAAAHRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPSSDVIET
FTRKAPPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKILYRPDGQHDGKLFSTH
KHSIEVPIPRDGEYVVEVRAHSDGGDGVVSQVKISGVSTLSSSLLSLLLPSLGFLVYSEF
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgccattgctggtcagccatctcctgctaatctccttaacatcctgtctagga
gactttacatggcacagaagatatggtcatggagtgtctgaggaggacaaaggatttggg
cccatttttgaagagcagccaatcaataccatttacccagaagagtcactggaaggaaaa
gtatcactcaactgccgggcacgcgccagcccatttccagtttacaaatggagaatgaat
aacggggacgtggacctgacaaacgatcggtacagtatggtcggaggaaaccttgttatc
aacaacccggacaaacagaaagacgctggagtgtactactgcctggcatccaacaactac
ggaatggtcaggagcacggaggcaaccctgagcttcgggtatctcgacccctttcctccc
gaggagcgtccggaagtgaaggtgaaggaagggaagggcatggtgcttctctgtgatcct
ccctaccacttcccagatgatcttagctaccgctggcttctgaatgaatttcctgtattt
atcaccatggataagcgaagatttgtgtctcagaccaacggcaatctctacatcgcaaat
gtcgagtcttctgacagaggcaactactcctgctttgtgtccagtccttctattacaaag
agtgtgttcagcaagtttattcccctcattccgattcctgaacgaacaacaaagccatat
cctgctgatattgtggtgcagttcaaggacatatacaccatgatgggccaaaatgtgact
ttagagtgtttcgctctagggaaccctgttcctgatatccggtggcggaaggtgctagaa
ccaatgcccagcactgccgagataagcacgtcaggggctgtcctcaagatcttcaacatc
cagctagaagatgaaggcctctacgagtgtgaggctgagaacatccggggaaaggacaag
caccaggcaagaatctatgttcaagcatttcctgaatgggtagagcatatcaatgacact
gaggtggacataggcagtgacctctactggccttgcatagccacagggaagcccattcct
accatcaggtggctgaaaaatggatacgcgtatcacaaaggggaactgagactgtatgat
gtgacttttgaaaatgccgggatgtaccagtgcatagcagaaaacgcgtatgggtccatt
tatgccaacgctgagctcaagatcctggctttagctccaacttttgaaatgaatcctatg
aagaaaaagatcttggctgcgaaaggaggaagggttatcattgaatgtaaacccaaggct
gcaccaaaacccaagttttcatggagcaaagggacagagtggctcgtcaacagcagcaga
atactcatatgggaagatggtagcttggaaatcaataatattacaagaaatgatggtgga
atctatacatgcttcgcagaaaataacagaggaaaagctaatagcactgggactctggtg
atcacaaatcccacacgaatcattttggccccaatcaatgctgacatcactgttggggaa
aatgccaccatgcagtgtgccgcgtctttcgatcctgccttggacctcacgtttgtgtgg
tccttcaatggctacgtgattgactttaacaaggaaattacgcatatccattaccagagg
aattttatgctggacgccaatggggaactgctcatccgaaatgcgcagctgaaacacgca
ggccggtacacgtgcacggcgcagacaatcgtggacaattcctcggcttccgctgacctt
gtcgttcgaggccccccaggtcctccaggaggcctgagaatagaagacatcagagctacc
tctgtggccctgacttggagccgtggttccgacaatcacagccctatctctaaatacact
atccagactaagacgattctctcagatgactggaaggatgcaaagacagatcccccaatc
attgaaggaaatatggagtcagcaaaagcagtggatttgatcccttggatggagtatgaa
tttcgagtggtggcaaccaatactttagggacgggagaacccagcataccatcaaacagg
atcaaaacagacggtgctgcaccaaatgtggctccctcagatgtaggcggtgggggcgga
accaacagagagctgacaataacgtgggcgcctttgtcaagagagtaccattatggtaac
aattttggttacatagtggcgtttaagccatttgatggagaagagtggaagaaagtgact
gtgactaacccagacactggccgctatgtccacaaagatgagaccatgaccccttctact
gcatttcaagtcaaagtcaaagcattcaacaataaaggagatgggccctacagcctcgta
gctgtcatcaactctgcacaagatgctcccagtgaagcccccacagaggtaggggtcaaa
gtgttatcatcctctgagatatctgtccattggaagcatgtgttagagaaaattgtggaa
agctatcagattcggtactgggctgggcatgacaaagaagcagccgcacacagagttcag
gtcaccagccaggagtactcagccaggctggagaaccttctgcctgacacccagtacttc
attgaagtgggagcctgcaacagtgccggatgcggaccttccagtgatgtgatcgagacc
ttcaccagaaaagcccctcctagccaaccaccaaggatcatcagttccgtgagatctggc
tcccgatatataatcacatgggatcacgttgtggcactatccaatgaatctactgtgaca
ggctacaagatactctatagaccggatggccaacatgacggcaagctgttctcaacccat
aaacactccatagaagtccccatccccagagacggagagtatgttgtcgaggttcgagca
cacagcgacgggggagacggagtcgtgtctcaagtcaaaatttcaggcgtgtccacgctg
tcttcgagcctcctcagcttgctcctgccctcccttggctttcttgtctactcggaattc
tga
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