Mus caroli (Ryukyu mouse): 110310459
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Entry
110310459 CDS
T05910
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04140
Autophagy - animal
mcal04148
Efferocytosis
mcal05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110310459 (Vps39)
04148 Efferocytosis
110310459 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110310459 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110310459 (Vps39)
Membrane trafficking [BR:
mcal04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110310459 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Lgl_C
KCTD11_21_C
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
110310459
NCBI-ProteinID:
XP_021039106
Ensembl:
MGP_CAROLIEiJ_G0024165
UniProt:
A0A6P5QWR2
LinkDB
All DBs
Position
2:complement(113147353..113189065)
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AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIENFKALAIPYLEHIIHVW
EETGSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVPAGEEGGELGEYRQKLLMFLEIS
SHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQNK
EGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgctttcgagccggtgccgatcctggaaaagcttcccctgcagatcgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaagcaagggcatcttcttctctac
aggattcggaaggatgttggttgtaacaggtttgaggtaacactagagaagtccaataag
aacttttccaaaaagatccagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaacaacatttatgtccatgacttactgacatttcaacaaatcactacagtc
tcaaaggccaagggtgcatcactgttcacctgtgacctccagcacactgagacgggtgag
gaggtgttgcggatgtgtgtggcagtgaggaagaagctgcagctgtacttctggaaggac
agagaattccacgaactgcagggagactttagtgtgccagatgtgcccaagtccatggca
tggtgtgaaaattctatctgcgttggtttcaagagagactattacctgatcagggtggat
ggaaaggggtccatcaaagagctcttcccaacaggcaagcagctggagcccttagttgcc
cctctggcagatggaaaagtagctgtgggtcaggatgatctgactgtggtgcttaacgag
gaaggcatctgcacgcagaaatgcgccctgaactggacagacatcccagtggccatggag
caccagcctccatacattgttgcagtgttgccaagatacgtggagatccgaacactggaa
ccaaggcttctggtccaaagcatcgagttgcaaaggcctcgcttcattacatcaggggga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagctcgct
gagatgaaagatgactcagacagtgaaaagcagcagcagatccatcacattaagaacttg
tatgccttcaacctcttctgccagaagcgctttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccacccacgtgatgggcttgtaccccgacctactgcccacggactac
aggaagcaactgcagtaccccaacccgctgcccacactctctggtgctgaactggagaag
gctcacttagctctcattgactacctgacacagaaacggagccagttggtaaagaagctg
aatgactcggatcaccagtccagcacctccccgctcatggagggcactcccaccatcaag
tccaagaagaagttacttcagatcattgacaccactctgctcaagtgctacctccataca
aatgtggccctggtggctcccttgctgcgcctggagaacaaccactgtcacatcgaggag
agtgagcatgtactgaagaaggctcacaagtacagcgagctgatcatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctagtggaccagtccaagaaagcaaactca
cctttgaaaggccacgagaggacggtgcagtatctgcagcatttaggcacagaaaacctt
catctgattttttcctactcagtctgggtgctgagagacttcccagaagatggcctgaag
atattcactgaagacctcccagaggtagagtctctgccacgagatcgagtgctcaacttc
ttgatagagaatttcaaggctctggccattccttatctggaacacatcatccacgtgtgg
gaggagacaggctcacagttccacaattgcctgatccagctgtactgtgagaaagtgcag
agtctgatgaaagactacctcctgtcgctgcccacaggtaaaagtccagtccctgctgga
gaggaagggggtgaactgggagaataccgacagaagctgctcatgttcttggagatttcc
agccactatgatccaggccggctcatctgtgattttccctttgatggcctcttagaagag
cgagctctcctgttggggcgcatggggaagcacgaacaagctctcttcatctatgtccac
gtcttgaaggacacaaagatggctaaggagtactgccacaaacactacgaccaaaacaaa
gaaggcaacaaagatgtgtatctgtccctgcttcggatgtacctgtcacctccaagcatt
cactgcctggggccaatcaaactagagctcctggagccacaggccaacctccaggctgcc
ctgcaagtcctagagctgcactacagcaaattagacaccaccaaggcaatcaaccttctg
ccagcaaacactcagatcaatgacatacgcatctttctagaaaaggtcttagaagaaaat
gcacaaaagaaaaggttcaatcaagtgcttaagaatcttctccatgcggagttcctcagg
gttcaggaagagcgaattttacaccagcaggtgaagtgcatcatcactgaggagaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcatttgcaagataccccaatggggtg
gttgtgcactacttctgctccaaagaggtaaactcagccgacacctga
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