Mus caroli (Ryukyu mouse): 110310627
Help
Entry
110310627 CDS
T05910
Symbol
Smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110310627 (Smarcd1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110310627 (Smarcd1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110310627 (Smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110310627 (Smarcd1)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110310627 (Smarcd1)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110310627 (Smarcd1)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110310627 (Smarcd1)
PBAF complex
110310627 (Smarcd1)
GBAF(ncBAF) complex
110310627 (Smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
110310627
NCBI-ProteinID:
XP_021039356
Ensembl:
MGP_CAROLIEiJ_G0020275
UniProt:
A0A6P5R9W0
LinkDB
All DBs
Position
15:93411683..93422631
Genome browser
AA seq
515 aa
AA seq
DB search
MAARAGFQSVAPSGGAGASGGAGVAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgggcgggtttccagtctgtggctccgagcggcggcgcgggagcctcagga
ggagcgggcgtggcggctgctctgggcccgggcggaactcccgggcctcccgtgcgaatg
ggcccggcgccgggtcaagggctgtaccgctctccgatgcccggggcggcctatccgaga
ccaggtatgctgccaggtagccgaatgacacctcagggaccttccatgggacctcctggc
tatggggggaacccttcagtccgacctggtctggcccagtcagggatggaccagtcccgc
aagagacctgcgcctcaacagatccagcaggtccagcagcaggcggtccaaaatcgaaat
cacaatgcaaagaaaaagaagatggctgacaaaatcctacctcaaaggattcgggaactg
gtaccagaatcgcaggcctacatggatctcctggcttttgaaaggaaactggaccagact
attatgaggaagcggctagatatccaggaggccttgaaacgtcccatcaagcaaaaacgg
aagctgcgaattttcatttctaacacgttcaatccggctaagtcggacgcggaggatggg
gaagggacggtggcttcctgggagctccgggtagaaggccggctcctggaggacgcggcc
ttgtccaaatatgacgccaccaagcaaaagagaaagttctcttcattttttaagtccttg
gtgatcgaactggacaaagacctgtatggcccagacaaccatctggtagaatggcacagg
actgccactacccaggagaccgatggcttccaggtgaagcggccaggagatgtgaatgta
cggtgtactgtcctgctgatgctggactaccagcccccccagtttaaattagaccctcgc
ctggctcggctcttgggcatccatacccagacacgtccagtgatcatccaagcactgtgg
cagtatattaaaacacacaagctccaggaccctcacgagcgagagtttgttctctgtgac
aagtacctccagcagatctttgaatctcagcggatgaagttctcagagatccctcagcgg
ctccacgccttgcttatgccaccagagcccatcatcatcaatcatgtcatcagtgtggac
ccaaatgaccagaaaaagaccgcgtgctatgacattgacgtggaggtggatgacacactg
aagacccagatgaactctttcctgttgtccactgccagccagcaggagatcgccacttta
gacaacaagatccatgagacgatagagaccatcaaccagctgaagacccagcgagagttc
atgttgagctttgcccgagaccctcagggtttcatcaatgattggcttcagtcccagtgc
agggacctcaagacgatgactgatgtggtgggtaacccggaagaggagcgtcgtgctgag
ttctacttccagccctgggctcaggaggctgtgtgccgatacttctactccaaggtgcag
cagaggcggcaagagttagagcaagccctgggaatccgaaacacatag
DBGET
integrated database retrieval system
