Mus caroli (Ryukyu mouse): 110310832
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Entry
110310832 CDS
T05910
Symbol
Smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04110
Cell cycle
mcal04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
110310832 (Smc1b)
04114 Oocyte meiosis
110310832 (Smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcal03036
]
110310832 (Smc1b)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
110310832 (Smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
110310832 (Smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
Ca_chan_IQ
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110310832
NCBI-ProteinID:
XP_021039601
Ensembl:
MGP_CAROLIEiJ_G0020123
UniProt:
A0A6P5R4E7
LinkDB
All DBs
Position
15:complement(79064603..79127254)
Genome browser
AA seq
1248 aa
AA seq
DB search
MGHLELLLVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKN
IQELIHGAHTGKPVSSSASVTIIYIEDSGEEKTFTRIIRGGCSEFHFGDKPVSRSVYVAQ
LENIGIIVKAQNCLVFQGTVESISMKKPKERTQFFEEISTSGEFIGEYEAKKKKLQKAEE
DAQFHFNVKKNVAAERKHAKIEKEEAEHYQNLLEELKINKIQLMLFQLYYNEEKINVLNT
ELEQMDGNLSVVKDTLSHHENIFKAKKKDYGMLTRQLQQTAKELKSVEAILNQKRPQYIK
AKENTSHHLKKLDLSKKLITDNEKQCSKQEDGIRALVAELADLDRAWKSFEKQMEEKILQ
KGRDIELENSQLDHYKLLKEQVRRKVGIMTQQLEKLQWEQKAEKERLAFEKRRHGDTQGN
LKQIKEQIEEHKKRIEKLEEYTKTCMDCLEDKKQQEEALIKEIENTKSRMSEVNEELSLI
RNELQNAGIDNHEGKRQQKRAEVLEHLKRLYPDSVFGRLLDLCHPIHKKYQLAVTKLFGR
YMVAIVVASEKIAKDCIRFLKAERAEPETFLALDYLDIKPINERLREIKGCKMMIDVIKT
QFPQLKKVIQFVCGNGLVCETVEEARHIAFGGPERRKAVALDGTLFLKSGVISGGSSDLK
HKALCWDEKELHSLRDKRSQLVQELKELMKTLRKETDLKQIQTLVQGTNTRLKYSQNELE
MIKKKHLATFYREQSQLQSELLNIDSQCTMLSEGINKQEQKIEEFQDKIDEVEDDIFQDF
CEEIGVKNIREFENKHIKQQQENDQKRLEFEKQKTRLNIQLEYSRNQLKKKLNNIDTLKT
TIQKGKEDIDNLKKTEEECLKIVEELMVKQEQIKEVLATQSSNIEKIHIQIEEERKKVLA
VDREVGKLQKEVVIIQGSLEQKLLEKHNLLLDCKVQDIDISLVLGSLEDIIEMELTETES
TQATADIYEKEASIQIDYSPLREDLKALQSDKEVEAHLTLLLQQVASQENTLLKTTAPNL
RAQENLKTVRDKFQESADVFEASRKEARICRQEFEQVKRRRYDAFSQCFEHISVAIDQIY
KKLCRNNSAQAFLSPENPEEPYLDGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVH
SFRPAPFFVLDEVDAALDNTNIGKVSSYIKEQSQEQFQMIIISLKEEFYSKADALIGVYP
EHNECMFSHVLTLDLSKYPDTEDQEGSRSHRKPRAPRVSVSPKSSQSR
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggggcaccttgagctgctcctcgtggagaatttcaagtcgtggcgaggccgccaggtc
atcggccctttcaagaggttcacctgcatcatcggccccaacggctctggaaaatctaat
gtaatggatgcacttagttttgtaatgggagaaaaaacaactaatttaagagtaaaaaac
attcaagaacttattcatggagcacatactggaaaacctgtttcttcctctgcaagtgtg
acaattatatacatagaggacagtggagaagagaaaacgttcacaaggattatccgaggg
gggtgctcagaatttcattttggggacaaacctgtgagtcgttctgtgtatgtagcccag
ttggaaaacataggcataatagtcaaagcacagaactgtctagtttttcagggaactgta
gagtcaatatccatgaaaaagcccaaagagagaacccagttttttgaagaaatcagtact
tcaggagaatttataggagaatatgaggcaaagaaaaagaaattacaaaaagctgaagaa
gatgcacaatttcattttaacgtgaaaaaaaatgtagctgcagaacggaagcatgcaaaa
atagagaaagaagaggcagaacattaccaaaatctccttgaagaattgaaaataaacaag
atacaactgatgcttttccaactatattataatgaggaaaaaatcaatgttttaaacact
gaattagagcaaatggacgggaatttaagtgttgtaaaagacactctttctcaccatgaa
aacatatttaaagctaagaaaaaggattatggaatgttaactagacaactacagcaaaca
gcaaaagaactgaaatctgttgaagcaattttaaatcagaagaggcctcagtacattaaa
gctaaagaaaacacttctcatcatctaaaaaaattagatttgtctaagaaattgataaca
gacaatgaaaaacaatgttctaagcaggaagatggcatacgagccttagtggcagaactg
gctgatttggatagagcatggaaaagttttgaaaagcagatggaagagaaaatcttacaa
aaagggcgagacattgaattggaaaatagtcagctggatcattacaaactgcttaaggag
caagtcagacggaaggttggtataatgacacaacaactggaaaaactgcagtgggaacag
aaggcagaaaaagaaagacttgcatttgaaaagaggaggcatggagacactcagggaaat
ctaaaacaaataaaagagcaaatagaagagcataaaaaacgaatagagaaattggaggaa
tatacaaagacgtgcatggattgcttggaagataaaaaacagcaagaagaggccctgata
aaagaaattgaaaatacgaaatcaagaatgtctgaagttaatgaagaattgagtcttatt
agaaatgaattgcagaatgctggaattgataaccatgagggaaaacgtcagcagaaaaga
gcagaagttctggaacaccttaaaagactttacccagattctgtgtttggaagactgctt
gatctgtgtcatcctattcataagaaataccagctggctgtgactaagctttttggccgg
tacatggttgccattgttgtagcctcagaaaagatagcgaaagattgtattcgatttctg
aaggcggaaagagctgaacctgagacattccttgctctagattaccttgatatcaaacca
atcaatgaacgactaagggaaattaaaggctgtaagatgatgatcgatgttataaagacc
cagtttcctcagctgaagaaagtgattcagtttgtttgtggaaatggccttgtctgtgag
acggtggaagaagcaagacatattgcattcggtggacctgaaagacggaaggcagtagca
cttgatggaacgctgtttttgaaatctggagtgatctctggagggtcaagtgacttaaag
cacaaagctctgtgctgggatgagaaagagttacacagtctaagagacaaaagaagccaa
ctagtccaagagctaaaggagttaatgaagacgctccgcaaggaaacagatctgaagcaa
atacagactttagtacaaggaaccaatacacgactcaaatattcacaaaatgaactagag
atgattaaaaagaagcaccttgctacattttaccgggaacaatctcagctacaaagtgaa
ttactgaatattgattctcagtgtactatgttgagtgaaggaatcaacaaacaggaacaa
aaaattgaagaatttcaagataagatagatgaggtagaagatgacatattccaagacttc
tgtgaagaaattggtgtgaaaaatatccgtgaatttgagaataaacatattaaacagcag
caagaaaatgatcaaaaaagattagagtttgaaaaacaaaaaactcggcttaatattcag
cttgaatatagtcgaaatcagcttaagaagaaactgaataatatcgacacattaaaaacc
acaatccagaagggcaaagaagatattgataacctaaagaagaccgaagaagaatgtctg
aaaattgttgaggaactcatggtgaagcaagaacaaattaaggaagtgcttgccacacag
agttccaacattgaaaaaattcacattcaaattgaagaggaacgcaagaaggttttggct
gttgatagggaagttggaaaattacagaaggaagttgtaatcattcagggttctttggaa
cagaaactgctagagaaacataacttgctgctagattgcaaagttcaagacattgacata
agtcttgtgctggggtcattggaggacatcattgaaatggagctaactgaaacagaaagc
acccaggcaacagctgatatctatgagaaagaagcatccatccaaatagactacagccct
ctaagggaggatttaaaggctctacaatcagataaggaggtggaggcccacctaacactc
cttctacagcaagtagcatcccaagaaaacactctactgaagacaacagctccaaacttg
cgagcacaggagaacttaaagactgtcagagataagtttcaagaatctgcagatgttttt
gaggccagcagaaaggaagccagaatatgtaggcaagagtttgaacaggtgaaaagacgg
aggtacgatgctttcagtcaatgttttgagcacatctcagtcgcaattgatcaaatctac
aagaagctctgcaggaacaacagtgcccaggcatttcttagcccagagaaccctgaagaa
ccttacttagatggaattagctataactgtgtggctccaggcaaacggttcatgcctatg
gacaacctgtcagggggagaaaagtgtgtggctgctctggctcttctgtttgctgtacac
agtttccggcctgctccattctttgtattagatgaagtagatgcagccctggacaatact
aacattggcaaagtctcaagttacatcaaagagcagagtcaggaacagtttcagatgata
atcatttccctgaaagaggagttctactccaaagctgatgcactgataggcgtctaccca
gagcacaatgagtgcatgttcagccatgtgttgactctggacctttccaagtatccagac
actgaagaccaagaaggcagcaggagccaccggaagcccagagcaccacgagtatcagtg
tccccaaagtcttcccagtctcgttag
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