Mus caroli (Ryukyu mouse): 110312071
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Entry
110312071 CDS
T05910
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
110312071 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcal04121
]
110312071 (Slx4)
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110312071 (Slx4)
Ubiquitin system [BR:
mcal04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
110312071 (Slx4)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110312071 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
110312071
NCBI-ProteinID:
XP_021041280
Ensembl:
MGP_CAROLIEiJ_G0020395
UniProt:
A0A6P7QPF7
LinkDB
All DBs
Position
16:complement(254832..281183)
Genome browser
AA seq
1730 aa
AA seq
DB search
MEESDDDFKELCASFFQRVRRNATKEASGERTRQKASGHTQNRGKRKEGRQVVARSKALQ
GPSEKKPRLGSQTPRTTKQGAPKSQEGSPALPANGKGDVLAPTPDQPVLCERAQSIQTES
APNGDSQPLPSCFTTTGVPSPRVSELVLQRMKQFKRADPERLRHASGECPRKTALGDSVP
RSPPEEIVGENEYKLHATDSDAAMALALQQEFRREEASSHHDSLEEKGLFFCQMCQKNLS
AMNMTRREQHVNRCLDEAEKAQRPAPPRIPDCPICGKPFLTTKSRISHLKQCAVRMEVGP
QLLLQAVRLQTAQPEVDGSPQVPSFSNHVGGLKRKGATTKREPRRRKVNKPEAPSEDLLV
AMALSRSEVEHCPVVPPLRLENAFSEKIRLGAEKKSRKKRLLVCPPQLVTQDSETTGRQI
EDRVAQLLSEEAELSCTPPLVASKIFKEELEPAGWRAQLPEGKRNFLWELSALTGAWAEE
SFYTVGLFPPIVSQCPTKEPQLPLELPKQGEPSPRRPPASQSSLPVSHSPKIRLLSSSQR
ERQALQDLVDLAVEGLSSSPQPGSQGVLTGLDLVPSSLPLTGFVLPCKKTLKKDDSASLS
LGLLVTDFGAMVNNPHLSDVQFQLDSGEVLYAHKFVLYARCPLLIQYVITESFSAEEDGD
LTQRVLLSDVSSEAAHAFLNYLYTADTDMPPSLVPDLRSLALRFGVSDLVQLCEQVPAVV
DLEGEQPEETSEDCESRAETFQELLRSVWVDNEGEVDTLLKPEVCEEERERVNEAEMEEI
YEFAATQRKLLQGGRAADPDGSTNPHREDSAVSEPSLAGVQSNKQLENTEHMESSGLEKE
EALASWGHKGHSTLLQDQCPDWAGKAEAQDALREATDHPSFCSRHRRGEECSPLHPNKAH
GCKQLLPSNPRVSSELSQITVDHEEQSDHVRERQADMAQAPTPHPCSLVSQSSVDGSPSQ
SWLHLYHTSHLSPSVSQSHSSISRVASPRSLSPATPTKQRRGSNIVTLQKDAGHHRGRQS
SPIAGHRNRGILISPAKSPPIDLTQSVPEPLSPRAQDPLHHVKKEDEVILLLDSDEELEH
TKTESVSKDSPEGRKVLEVSPRSSELFSVIDVEEDHEHFQSPLKREAELQHGEEGQLGNQ
SALGRRDIPWLLCSQKTSLDEDSATDTSWLVPATPGVSKSRDCSSQTQIKSLKTRTPSDE
TAQQTPRPNLEGRTMLEAAQQFSVIMPHTQPTLGAFDSGRQAYRSPSHPCPRHHRLSSSQ
PSCPGPDFTRWSQKSSAPRPCLPNLPTADDVVEVGDSDDEQEVASHQGDSNPVLDGDPPG
PMGDYCWNEPLSPIPIDHLNLERTGPLTTSSPSSQVLEALHSDDCHSPELGTTPIRGSCG
ALRESQEQSSQAGSPESSKLSVLSQALWDDWNEEEGQSPEAPPVAQMLSTRTRKPDRPET
PKGANQKKNLPPKVPITPMPRYSIMETPVLKKELDRFGVRALPKRQMVLKLKEIFQYTHQ
TLESDSEDEIQSSQIPAEVPCSQASTTETCNPSRSGSYTQLMATAGLRTQRSKGPTKSKS
LQHQEKQLSESISHPSRLPAGEPSHPDGDAQLPASQESMATSVDGSDNSFSSKSSSAEFG
AAFECSGEDEDEEVGVTASQAAIQAADTEEAVRRYIRSKPALHRQVLRYQPVELAELQAE
LKQNGIPVAMGKLLDILDTQCVTFTTAAARKEKLKHKRRQPSGRKKKDQK
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtcagatgacgatttcaaagaactctgtgccagctttttccaaagggtgaga
agaaatgcgaccaaagaagcatcaggagagagaacgaggcagaaggcctctggccacact
cagaaccgaggcaaacggaaagaaggccgccaagttgtcgccaggagcaaagctcttcaa
ggcccttcagagaagaaacctcgattaggcagccagactcctaggactacaaagcaaggg
gcacccaagtctcaagaagggagcccagctctccctgcgaatgggaagggagatgttctt
gctcctaccccagatcagccagtgttgtgtgagagagcacagagcattcagacagagagt
gctcccaatggcgactcccagcctcttccttcctgtttcacgacaactggtgtaccaagt
cccagagtctcagagctggttctgcaacggatgaagcagttcaagagagcagaccctgag
cgcctgagacacgcctcaggagaatgcccgcgaaagactgcactgggagacagtgtccca
aggagccctcccgaggagatagtgggagaaaacgagtataaactgcatgccacagacagt
gatgctgcaatggccctggccttacagcaggagtttagaagggaggaagcatcctcacac
catgacagcctggaggagaaggggttgttcttctgtcaaatgtgtcagaaaaatctctca
gcaatgaatatgacccggagggagcaacatgtgaacagatgcctagatgaggcagagaag
gcacagagacctgctccacctcggatccctgattgcccaatatgtgggaaaccgttcctc
accaccaagagccgaatcagtcacttgaagcagtgtgcggtgaggatggaagtgggtccc
caactcctgcttcaggctgtgaggctacagacagctcagccagaggtggatggcagccct
caggtacccagtttcagcaaccatgttggaggtttgaaacggaaaggagccaccaccaag
agggagccaaggaggaggaaagtcaataagcctgaggctccatctgaagatctgttggtg
gccatggctctttctcgctctgaggtggagcactgtccagttgtgcccccactcagactg
gaaaatgctttttctgagaagataaggctaggagcagagaagaaaagtcgcaagaagaga
ctcctggtgtgtcccccacagttggtaacccaagactctgagaccacaggtagacagatt
gaggatcgtgttgcccagcttctgtcagaggaagcagaactgtcttgcaccccaccactt
gttgccagcaagatttttaaggaagaattggaacctgcaggctggcgagcacagctgcct
gaagggaagcggaactttctgtgggaactcagcgctctcacaggagcctgggctgaggag
tccttctacacagtgggactgtttcctccaattgtgtcccaatgccctaccaaggaaccc
cagctaccactggagctgcccaagcaaggagagccgagtccacgacggccacctgcttcc
cagagcagccttcctgtgagccacagccccaagatccggctgctgtcctccagccagagg
gagcgtcaagcccttcaggaccttgtggacttggcagtggaagggctgagctctagccca
cagccggggagtcagggcgtactcacagggttggacttggtacctagcagccttccgctg
acagggtttgtcctgccatgtaagaagaccctgaagaaggacgacagtgcctcactctct
cttgggttattggtgacagactttggggccatggtcaataatccacacctgagtgatgtc
cagttccagcttgacagtggagaggtgctttatgcacacaagtttgttctttatgcgaga
tgcccacttcttattcagtatgtcattactgaaagcttttctgctgaagaggatggggat
ctgacccagcgtgtcctgctgagtgatgtgagctcagaggctgcccatgcatttctgaac
tacctctacacggcagacactgacatgcctcccagcctggttccggatctgcgttccctg
gccctaaggtttggtgtgagtgaccttgttcagctgtgtgaacaagtgcccgccgtggtg
gacttagagggagaacagccagaagagaccagtgaggactgtgaaagccgagcagagact
ttccaggaactcctgaggtcggtgtgggtagacaatgagggggaagtagacactctgctg
aaacctgaggtctgtgaagaagagagagaaagagtgaatgaagcagaaatggaagagata
tacgagtttgctgctacgcagaggaagcttctccaggggggtagagcagcagacccagat
gggagcactaacccgcacagggaggacagtgcagtttctgagccttccctggcaggtgtc
cagagtaacaaacagctagaaaatacagagcacatggagtcatctgggttagaaaaagaa
gaggcactagccagctggggacacaaaggacattccactctgctgcaggaccagtgccca
gactgggcagggaaagcagaggcccaggatgcactgagggaggcaactgaccaccccagc
ttctgcagccgccacaggaggggggaagagtgctcgcctttgcacccaaacaaggcccat
ggctgcaaacagctccttccatcaaatccaagagtgtcatctgaactgtcacaaataaca
gttgatcatgaagagcagagtgaccatgtcagagagaggcaggcagacatggcccaggca
cctactccacacccctgcagccttgtgtcacagtcttctgtggatggaagtcccagccag
tcatggcttcacctataccacacaagtcatttgtccccctcagtgtcccagtcacacagt
agcatttccagggtggcatccccaagatcactgtctccagctacaccaactaagcagagg
agaggcagtaacattgtcacattacagaaagatgctggccaccacagaggccgacaaagt
agccccatagcaggacacagaaataggggcatcctgatttccccagcaaagtctccaccc
attgacctcacacagtcagtacctgagcccctgagccccagggcccaggatcctctgcat
cacgtgaaaaaggaggatgaggtcatcctgttactggactcagatgaggagctggagcac
accaagacagagtcagtttctaaagattccccagagggaaggaaagttctagaagttagc
cccaggtcctctgaactgttttcagtcattgatgttgaagaagatcacgaacatttccaa
agcccactgaagagagaggccgagctacagcacggggaggaaggacagctgggaaaccag
tctgcactgggccgcagagacatcccctggctgctctgcagccagaaaaccagcctggat
gaggacagtgctacagacacctcttggctggtgcctgccactccaggggtcagcaagagt
cgtgattgctcatcacagacccaaatcaaaagccttaagaccaggactccttcagatgag
actgctcagcaaacacccagacctaacttagaaggcaggaccatgctggaagcagcccag
cagttctctgtgatcatgccacacacccagcctactctaggagcctttgacagtggaaga
caggcctacagaagcccttcccatccctgccccaggcaccacagactctcttcttcacag
ccatcatgtcctggccctgattttaccaggtggtcccagaaatcttccgcacctagacca
tgcctgccaaatctgcctacagctgatgacgtggtagaagttggggacagtgatgatgag
caggaggtggcttcccatcaaggagacagcaaccccgtgctagatggtgaccccccaggt
cccatgggtgactactgttggaatgagcctctctcaccaattccaattgaccacttgaat
ctggagcggaccggccccctgaccacaagcagtcccagcagtcaggtcctggaggctctg
cacagtgatgactgccactccccggaacttggtaccacccccatccgaggaagctgtggt
gctctgagagagtctcaagaacagtcctcacaggctggctctccagagagcagcaaactg
agtgttcttagccaggctctgtgggacgactggaatgaggaggaaggacagtctccagag
gctccacctgtggctcaaatgctgagcaccagaacccggaagccagacaggccagagaca
ccaaaaggtgctaaccagaaaaagaacttgcctcccaaagtgcctataactccaatgcca
aggtattcgatcatggagaccccggtgctgaagaaagaactggacaggtttggagtccgt
gctctgcccaaacgccagatggttctaaaactgaaggagattttccagtacactcaccag
actctggagtcagactctgaggatgaaatccagtcctcccagatacccgcagaggtacct
tgtagccaggcatctaccactgagacctgcaacccttcaaggtcaggaagttacacccag
ctcatggccactgcaggtcttaggactcaaagatccaagggccctactaaaagcaagagt
cttcagcatcaagagaagcagctcagtgaaagtatttctcacccaagcaggttgccagct
ggggagccttcacatcctgatggtgacgcccagctcccagcatcccaggaatccatggct
acctctgtggacggcagtgacaactcctttagctctaaaagctcctctgctgagtttgga
gctgcttttgagtgttcaggtgaagatgaggacgaggaggtcggggtcactgcatcacag
gcagcaatccaggccgcagacacagaggaggcagtgaggcgctatatccgttctaagcct
gccctgcacaggcaggtcctgaggtaccagcctgtggagttggccgagctgcaggctgag
ctgaagcagaatggtatccctgtggccatgggcaagctgttggacatcctggacactcag
tgcgtcaccttcaccactgctgcagcccgaaaggagaagctcaaacacaagagacggcag
ccctcaggccgaaagaaaaaggatcagaaatga
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integrated database retrieval system
