Mus caroli (Ryukyu mouse): 110312336
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Entry
110312336 CDS
T05910
Symbol
Sdc4
Name
(RefSeq) syndecan-4
KO
K16338
syndecan 4
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04512
ECM-receptor interaction
mcal04514
Cell adhesion molecules
mcal04820
Cytoskeleton in muscle cells
mcal05205
Proteoglycans in cancer
mcal05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110312336 (Sdc4)
04514 Cell adhesion molecules
110312336 (Sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110312336 (Sdc4)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
110312336 (Sdc4)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
110312336 (Sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mcal00535
]
110312336 (Sdc4)
Proteoglycans [BR:
mcal00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
110312336 (Sdc4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
110312336
NCBI-ProteinID:
XP_021041488
Ensembl:
MGP_CAROLIEiJ_G0024644
UniProt:
A0A6P5R949
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Position
2:complement(156363191..156381920)
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AA seq
198 aa
AA seq
DB search
MAPACLLAPLLLLLLGGFPVVPGESIRETEVIDPQDLLEGRYFSGALPDDEDAGGSDDFE
ISGSGDLDDTEEPRPFPEVIEPLVPLDNHIPENAQPGIRVPSEPKELEENEVIPKRAPSD
VGDDMSNKVSMSSTAQGSNIFERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDEGSY
DLGKKPIYKKAPTNEFYA
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctgcctgcctgcttgcgccgctgctgctgctgctcctcggaggcttccccgtg
gtccccggcgagtcgattcgagagacagaggtcatcgacccccaggacctcctggaaggc
agatacttctctggagccctccccgacgacgaagatgctggcggctcggatgactttgag
atctcgggttccggagatctggatgacacggaggagcccaggcccttccctgaagtgatt
gagcccttggtgccactggataaccacatccccgagaatgcacagcctggcatccgtgtc
ccctcagagcccaaggaactggaagagaatgaggtcattcctaaaagggccccctccgac
gtgggggatgacatgtccaacaaagtatccatgtccagcactgcccagggcagcaacatc
tttgagagaactgaggtcttggcagctctgatcgtgggcggcgtggtaggcatcctcttt
gccgttttcctgatcctgctgctggtgtaccgcatgaagaagaaggatgaaggcagttac
gacttgggcaagaaacccatctacaaaaaagcccccaccaacgagttctacgcatga
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