KEGG   Mus caroli (Ryukyu mouse): 110312336
Entry
110312336         CDS       T05910                                 
Symbol
Sdc4
Name
(RefSeq) syndecan-4
  KO
K16338  syndecan 4
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal04512  ECM-receptor interaction
mcal04514  Cell adhesion molecules
mcal04820  Cytoskeleton in muscle cells
mcal05205  Proteoglycans in cancer
mcal05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110312336 (Sdc4)
   04514 Cell adhesion molecules
    110312336 (Sdc4)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110312336 (Sdc4)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    110312336 (Sdc4)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    110312336 (Sdc4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:mcal00535]
    110312336 (Sdc4)
Proteoglycans [BR:mcal00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   110312336 (Sdc4)
SSDB
Motif
Pfam: Syndecan Glycophorin_A
Other DBs
NCBI-GeneID: 110312336
NCBI-ProteinID: XP_021041488
Ensembl: MGP_CAROLIEiJ_G0024644
UniProt: A0A6P5R949
LinkDB
Position
2:complement(156363191..156381920)
AA seq 198 aa
MAPACLLAPLLLLLLGGFPVVPGESIRETEVIDPQDLLEGRYFSGALPDDEDAGGSDDFE
ISGSGDLDDTEEPRPFPEVIEPLVPLDNHIPENAQPGIRVPSEPKELEENEVIPKRAPSD
VGDDMSNKVSMSSTAQGSNIFERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDEGSY
DLGKKPIYKKAPTNEFYA
NT seq 597 nt   +upstreamnt  +downstreamnt
atggcgcctgcctgcctgcttgcgccgctgctgctgctgctcctcggaggcttccccgtg
gtccccggcgagtcgattcgagagacagaggtcatcgacccccaggacctcctggaaggc
agatacttctctggagccctccccgacgacgaagatgctggcggctcggatgactttgag
atctcgggttccggagatctggatgacacggaggagcccaggcccttccctgaagtgatt
gagcccttggtgccactggataaccacatccccgagaatgcacagcctggcatccgtgtc
ccctcagagcccaaggaactggaagagaatgaggtcattcctaaaagggccccctccgac
gtgggggatgacatgtccaacaaagtatccatgtccagcactgcccagggcagcaacatc
tttgagagaactgaggtcttggcagctctgatcgtgggcggcgtggtaggcatcctcttt
gccgttttcctgatcctgctgctggtgtaccgcatgaagaagaaggatgaaggcagttac
gacttgggcaagaaacccatctacaaaaaagcccccaccaacgagttctacgcatga

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