Mus caroli (Ryukyu mouse): 110312412
Help
Entry
110312412 CDS
T05910
Symbol
Skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110312412 (Skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110312412 (Skiv2l)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110312412 (Skiv2l)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110312412 (Skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
110312412 (Skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
110312412
NCBI-ProteinID:
XP_021041641
Ensembl:
MGP_CAROLIEiJ_G0021477
UniProt:
A0A6P5R2S7
LinkDB
All DBs
Position
17:complement(31573994..31584897)
Genome browser
AA seq
1244 aa
AA seq
DB search
MMETERLVLPPLDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAAVETPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLHTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPVPGLLSLSRLLEPLDLSGGDEDEGEAAGGPRGDTAS
ASPSGTPLVRASSLEDLVLKEAATVVSTPEPPKAPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGSAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALADLTKRLGALEEPDVTGQLADLPEYYSWAEELTETQNMIQQRIMESVNGLKSLSVGR
VVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSDNPRDKGPATPDVPHPDDLV
GFKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVT
TAVQELLRLAQSYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELIRGAQCVHSPRFPA
QYVKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVA
KRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgttctgcctcccctagatcccctgaacctaccccttcga
gctctggaagtggggtgcactggccgttgggagctgctgaacgtgccagggcctccagag
agcactctcccccatggcctccctccatgtgccccagatctgtgccaggaagcagagcag
ctgtttctgtcgtctccagcctggcttcctctacatggtgtagagcactcagctcgaaaa
tggcagaggaagacggatccctggtcactcctggctgctgtggagactccagtcccatct
gaccttcaggcccagagacacccaaccacaggccatatactgggctataaggaggtcctg
ctggagaacacaaatctgtcggctacaacctccttgtcccttcgccggcctccagggcca
gcctcccagtcactatggggcaatccaacacagtaccctttctggccaggtgggatggat
gagcccagcataactgatctgcatactcgggaggaagctgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggggtggattttgcccccaaagat
catccagctcctgtgccaggtttgctcagcctcagccgtctgctggagcctcttgatctg
agtggaggcgatgaggatgaaggcgaggcagcaggaggccctagaggggacactgcctct
gcttccccctctggtactcccctggtccgagcaagcagcttggaggatctagtgttgaag
gaagctgccacagtcgtatctaccccggagcctcccaaagctccacctcaggaacagtgg
gctgtgcctgtggacgtcacctcccccgtgggcgacttttaccgtctcatccctcagcca
gccttccagtgggcgtttgagccagatgtgtttcagaagcaggccatcctgcacttggag
cagcacgactctgtctttgttgcagctcacacatctgctgggaagacagtggtggctgaa
tatgccattgccctggcccagaaacacatgactcgtaccatctacacttctcctatcaaa
gccctgagcaaccagaagtttcgggacttccggaacacatttggggacgtggggctgctc
acaggggatgtgcagctgcacccagaggcctcctgcctcatcatgaccacggagatcctt
cgctccatgctgtacagtggctccgacgtcatccgagacctggagtgggttatctttgat
gaagtccactatatcaacgatgctgagcgtggggtcgtgtgggaggaggtgctcatcatg
cttcctgagcacgtctccatcatccttctgagtgccaccgtccccaacgccctggagttt
gctgactggattgggcggttgaagcggaggcagatctatgtgatcagcacggttgcccgg
ccagtccccctggagcactatctcttcacagggaacagccccaagacacagggcgagctc
ttcctgctgctggactccagaggggccttccacacccaggggtactatgctgcggtggag
gccaagaaagagaggatgagcaagcacgcccagaccttcggggccaagcagcccacgcac
cagggtggatctgcgcaggaccgaggggtgtacctgtccctgctggcttccctccggacc
cgggctcagttgccagtggtagtgttcaccttctcccgaggccgctgtgatgagcaggct
tcgggcctcacctctctagacctcacgacaagctcagagaagagtgagatccacctcttc
ctgcagcgctgccttgcacggctccgaggctctgaccgacagctaccccaggtcctgcac
atgtcggagctccttcgccgaggcctgggtgtgcaccacagcggcatcctgcccatcctt
aaggagattgtggagatgcttttcagcaggggcctggtcaaggtcttgtttgccaccgag
acttttgccatgggtgtaaacatgccagccaggacagtggtgtttgactccatgcgcaaa
catgatggctctaccttccgggacctgctgcctggagagtatgtgcagatggcaggccgg
gcaggccggaggggcctggaccccacgggcactgtcatccttctctgtaagggcagagtg
cctgagatggcagatctacaccgcatgatgatggggaaaccatcccaacttcagtcccag
ttccgcctcacatataccatgatcctcaacctgctgcgggtggatgccctcagagtggag
gacatgatgaagaggagcttctcagagttcccatcccgcaaggacagcaaggcccatgag
caggctctggctgacctcaccaagaggctgggggctttggaggagcctgatgtgactggt
cagttggctgacctacctgagtattacagctgggcggaggagctgacagagacccagaac
atgatccagcaacgcatcatggagtctgtgaatgggctgaaatctctctcagtgggaagg
gtggtagttgtgaagaatgaggaacatcacaatgcactgggtgtgatcctgcaggtctcc
tcaaactccaccagcagggtatttacaacattggtcttgtgtgataagcctgttgtgtct
gataacccaagggacaagggaccagccactccagatgtgccccacccagatgaccttgta
ggcttcaagctgttcctgcctgaagggccctgtgagcacaccgtggccaagctccagcca
ggagatgtggctgccatctctaccaaagtgctccgggtgaatggggagaagatctctgag
gactttagcaagaggcagcaaccaaaattcagaaaggaccctccccttgcggctgtgacc
actgctgttcaggagctgctgcgtctggctcagtcctatccagcaggacccccaaccctt
gaccctatcaacgacctgcaactcaaggatgtggcagtggtagaaggtgggctccgggcc
cggaagctggaggagctgatccgcggggctcagtgtgtgcacagcccccggtttcctgcc
cagtatgtgaagctgcgggagcgaatgcagattcagaaggaaatggagaggctgcgcttc
ctcctgtctgaccagtcgctgttactgctccccgagtaccaccagcgtgtagaggtgctc
cggaccctgggctatgtggatgaggctggcacagtgaagctggcaggcagagtggcctgt
gccatgagcagccatgagctgctcctcactgaactcatgtttgacaatgcactgagcgct
ctgcggccagaggaaatcgcagctctgctctctggcctggtgtgccagagccctggggac
cctggtgaccagctcccaagtaccctcaaacagggggtagaacgcgtcaaagctgtggcc
aagcggattggtgaggttcaggtggcctgcggtctgaaccagacagtggaggagtttgtg
ggagagctgaattttgggctggtagaggttgtgtatgagtgggctaggggtatgcccttc
tccgagttggcagggctctcagggacccctgagggcttggtcgtccgctgcatccagcgt
ctggctgagatgtgtcgctcgcttcgaggagcagcacgtttggtgggtgagcctgtgctg
ggtgccaagatggagacggcagccaccttgctacggcgggacatcgtcttcgcagccagc
ctctacacccagtaa
DBGET
integrated database retrieval system
