Mus caroli (Ryukyu mouse): 110312433
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Entry
110312433 CDS
T05910
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X2
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110312433 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110312433 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110312433 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110312433 (Arid1b)
03021 Transcription machinery [BR:
mcal03021
]
110312433 (Arid1b)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110312433 (Arid1b)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Helix-turn-helix
ARID
110312433 (Arid1b)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110312433 (Arid1b)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110312433 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
110312433
NCBI-ProteinID:
XP_021041672
Ensembl:
MGP_CAROLIEiJ_G0021021
UniProt:
A0A6P5RC33
LinkDB
All DBs
Position
17:1883124..2233336
Genome browser
AA seq
2297 aa
AA seq
DB search
MAHSASAAAAASSNSAQSGGSEAALKEGGSAAALSSSAAVAASSSSAGLGSAMETGLLPN
HKLKAVGEAPAAPPHQQHHHHHAHHHHHHHAHHLHHLHHHHALQQQLNQFQQPQPPQPQQ
QQPPPPPQQQHPTANNSLGGAGGGAPQPGPDMEQPQHGGAKDSVAGNQADPQGQPLLSKP
GDEDDAPPKMGEPAGSRYEHPGLGAQQQPASVAVPGGGGGGPAAVSEFNNYYGSAAPASG
GPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPSSMDPLQNSHEGYPNSQYNHYPGYSR
PGAGGGGGGGGGGGGSGGGGGGGGAGGAGGAAAAAAGAGAVAAAAAAAAAAAAAAGGGGG
GGYGSSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAGGFQRFAGQNQHPS
GATPTLNQLLTSPSPMMRSYGGSYPDYSSSSAPPPPSQPQSQAAAGAAAGGQQAAAGMGL
GKDLGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGTHP
HSQPQQSSPYPGGSYGPPGAQRYPLGMQGRAPGALGGLQYPQQQMPPQYGQQAVSGYCQQ
GQQPYYNQQPQPSHLPPQAQYLQPAAAQSQQRYQPQQDMSQEGYGTRSQPPLAPGKSNHE
DLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHAS
PHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSP
MPQERGFMTGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISNFQQSNSSGTYGPQMS
QYAPQGNYSRTPTYSGVPSASYSGPGPGMGINANNQMHGQGPAQPCGAMPLGRMPSAGMQ
NRPFPGTMSSVTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFP
GMNQSGLVASSSPYSQSMNNNSSLMSTQAQPYSMTPTMVNSSTASMGLADMMSPSESKLS
VPLKADGKEEGVSQPESKSKDSYGSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDS
ISSPGWPKTPSSPKSSSSSTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPA
VGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF
ECKTERGEEPPPEVFSTGDAKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKP
PTPASTPHGQMTPMQSGRSSTVSVHDPFSDVSDSAYPKRNSMTPNAPYQQGMGMPDMMGR
MPYEPNKDPFSGMRKVPGSSEPFMTQGQMPNSGMQDMYNQSPSGAMSNLGMGQRQQFPYG
TSYDRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMY
NMQYGSQQQEMYNQYGGSYSGPDRRPIQGQYPYPYNRERMQGPGQMQPHGIPPQMMGGPM
QSSSSEGPQQNMWATRNDMPYPYQSRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHESQW
PSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFQRSLESRMSPSKS
PFLPTMKMQKVMPTVPTSQVTGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSKDIV
TPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLI
DIFGILMEYEVGDPSQKALDHRAGKKDDSQSLEDDSGKEEDDTECLVEEEEEEEEEEEDS
EKIESEGKSSAALAAPDASVDPKETPKQASKFDKLPIKIVKKNKLFVVDRSDKLGRVQEF
SSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSTGKKKELEGKGDSEEQPEKS
IIATIDDVLSARPGALPEDTNPGPQSDSGKFPFGIQQAKSHRNIRLLEDEPRSRDETPLC
TIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAP
QTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGL
LHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFY
ATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTMAQY
QQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLN
SLVASVICDVLFQIGQL
NT seq
6894 nt
NT seq
+upstream
nt +downstream
nt
atggcccatagcgcgagcgccgcggcggccgccagctccaacagcgcgcagagcggcggc
tccgaggcggctctcaaggagggtggaagcgccgccgcgctgtcctcctccgccgccgtc
gcggcctcttcctcctcggcgggcctcggctcggccatggagaccgggctgctccccaac
cacaaactgaaagccgttggcgaggcccccgctgcaccgccccatcagcagcaccaccac
caccatgcccaccaccaccaccaccaccatgcccaccacctccaccacctccaccaccac
cacgcactacagcagcagctaaaccagttccagcagccgcagccgccgcagccacagcag
cagcagccgccgccaccgccgcagcagcagcatcccactgccaacaacagcctgggcggt
gcgggcggcggcgcgcctcagcccggcccggacatggagcagccgcaacatggaggcgcc
aaggacagtgtcgcgggcaatcaggctgacccgcagggccagcctctgctgagcaagccg
ggcgacgaggacgacgcgccgcccaagatgggggagccggcgggcagccgctatgagcac
ccgggcctgggcgcgcagcagcagcccgcgtcggtcgccgtgcccgggggcggcggcggc
ggcccagcggccgtctcggagtttaataattactatggcagcgctgcccctgctagcggc
ggccccggcggccgcgctgggccttgctttgatcaacatggcggacaacaaagccccggg
atggggatgatgcactccgcctctgccgccgccggggcccccagcagcatggaccccctg
cagaactcccacgaagggtaccccaacagccagtacaaccattatccgggctacagccgg
cccggcgcgggcggcggcggcggcggcggcggaggaggaggaggcagcggaggaggtgga
ggaggaggaggagcaggaggagcaggaggagcagcggcagcggcagcaggagccggagct
gtggcggcggcggccgcggcggcggcggcagcagcagcagcagcaggaggaggcggtggc
ggcggctatgggagctcgtcctcggggtacggggtgctgagctccccgcggcagcagggc
ggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagcaaggcggccgcc
ggcgcggcggcggcggcggggggcttccagcgcttcgccggccagaaccagcacccgtcg
ggggctacaccgaccctcaaccagctgctcacctcacccagccccatgatgaggagctac
ggcggtagctacccggactacagcagctccagcgcgccgccgccgccgtcgcagccccag
tcccaggcggcggcgggggcggcggcgggtggccagcaggcggccgcgggcatgggcttg
ggcaaggacctaggcgcccagtacgccgctgccagcccggcctgggcggccgcgcaacaa
aggagtcacccggcgatgagccccggcacccccggaccgaccatgggcagatcccagggc
agcccgatggacccaatggtgatgaagagacctcagttgtatgggatgggtactcacccc
cactcccagccgcagcagagcagcccatacccaggaggctcctacggtcccccaggtgca
cagcggtatccccttggcatgcagggccgggctccaggggccctgggaggcttgcagtac
ccgcagcagcagatgccaccgcagtacggacagcaagctgtgagtggctactgccagcaa
ggccagcagccatactacaaccagcagccgcagccctcgcacctcccgccccaggcacag
tacctgcagccggcagcggcgcagtcccagcagaggtaccagccacagcaggacatgtct
caagaaggctatggaactagatctcagcctcctctggcccctgggaaatccaaccatgaa
gacttgaatttaattcaacaggaaagaccatcaagtctaccagacctgtctggctccatc
gatgacctccccacgggaacagaagccactctgagctcagcagtcagtgcatccgggtct
acaagcagccagggagatcagagcaacccagctcagtctcctttctccccacatgcatca
cctcacctctccagcatccctggagggccgtcaccttctcctgtcggctctcctgtggga
agcaaccaatcgaggtctggtccgatctcccctgcgagtattccaggtagccagatgcct
ccgcagccacctggaagccagtcagaatccagttcccatcctgccttgagccagtcacca
atgccacaggaaagaggttttatgacaggcacacagagaaaccctcagatgtctcagtac
ggacctcagcagacaggaccatccatgtcgcctcacccatctcctgggggccagatgcat
cctgggatcagtaactttcagcagagtaactcaagtggcacgtacggcccacagatgagc
cagtatgcaccccaaggcaactactccagaaccccaacatatagcggggtacccagtgca
agctacagcggcccagggcccggtatgggcatcaatgccaacaaccagatgcatggacaa
gggccagcccagccatgtggtgctatgcccctgggacgaatgccttcagctgggatgcag
aacagaccatttcctggaaccatgagcagcgtcacccccagttctcctggcatgtctcaa
cagggagggccaggaatgggcccaccaatgcccactgtgaaccggaaggcccaggaagct
gccgcagctgtgatgcaggctgctgcaaactcagcacaaagcaggcaaggcagttttcct
ggcatgaaccagagtggccttgtggcctccagctctccctacagccagtccatgaacaac
aactccagcctgatgagcacccaggcccagccctacagcatgacgcccacaatggtgaac
agctccacagcatctatgggtcttgcagatatgatgtctcccagtgagtccaaattgtct
gtgcctcttaaagcagatggtaaagaagaaggcgtgtcccagcctgagagcaagtcaaag
gacagctatggctctcagggcatttcccagcctccaaccccaggcaacctgcctgtccct
tccccaatgtctcccagctctgccagcatctcctcctttcatggagatgagagtgacagc
attagcagcccaggctggcccaagacaccatcaagccctaagtccagctcttcctccact
actggggagaagatcacgaaggtctatgagctggggaatgagccggagaggaagctgtgg
gtcgaccgttacctaacgttcatggaagagaggggctccccggtatccagtctgccggca
gtgggcaagaagcccctggacctgttccgactctatgtctgtgtcaaggagattggaggt
ttggcgcaggttaataaaaacaagaagtggcgtgagctggcgaccaacctgaatgttggc
acttccagcagcgcagccagctccctgaaaaagcagtatattcagtacctgttcgccttt
gagtgcaaaactgagcgtggggaggagcccccacctgaagtcttcagcactggggatgcg
aagaagcagccaaagctccagccgccatctcctgctaactcaggatccttacaaggccca
cagactccacagtcaactgggagcaattcgatggcagaggttccaggtgacctgaagcca
ccaaccccagcctctacccctcatggacagatgactcccatgcaaagcggaagaagcagt
acagtcagtgtgcatgacccgttctcagacgtgagtgactcagcgtacccaaaacggaac
tccatgactccaaatgccccgtaccagcagggcatgggcatgccagacatgatgggcagg
atgccctatgagcccaacaaggaccctttcagtggaatgagaaaagtgcctggaagtagt
gagccctttatgacacaagggcagatgcccaacagcggcatgcaggacatgtacaaccag
agcccctcaggtgccatgtccaatctgggcatgggacaacggcagcagtttccctacgga
accagttatgaccgaaggcatgaggcttacgggcaacagtacccaggccaaggccctccc
acaggacagccgccgtatggaggacaccagcctggcctgtacccacagcagccgaattac
aaacgtcatatggatggcatgtacgggcctccagccaagcggcacgagggagacatgtac
aacatgcagtatggcagccagcagcaggagatgtataaccagtatggaggctcctactct
ggcccggacagaaggcccatccagggacaatatccctacccctacaacagagaaaggatg
cagggcccaggccagatgcagccacacggaatcccacctcagatgatggggggccccatg
cagtcatcttccagcgaggggcctcagcagaacatgtgggctacacgcaacgatatgcct
tatccctatcagagcaggcaaggcccgggcggccctgcacaggcacccccttacccaggc
atgaaccgcacagatgatatgatggtacctgatcagaggatcaatcatgagagccagtgg
ccttctcacgtcagccagcgccagccttacatgtcatcttcggcctccatgcagcccatc
acgcgcccacctcagtcatcctaccagacaccaccgtcactgccaaaccacatctccagg
gcacccagccccgcctccttccagcgctccctggagagtcgcatgtctccaagcaagtct
cccttcctgcccaccatgaagatgcagaaggtcatgcccacagtccccacatcccaggtc
accggcccacccccacagccaccgccaatcagaagggagattacctttcctcctggctcc
gtagaagcatcacagccagtcctgaaacaaaggcgaaagattacctcaaaagatatcgtt
actcccgaggcgtggcgtgtgatgatgtcccttaaatcgggtctgttggctgagagcacg
tgggctctggacaccatcaatattctcctctatgatgacagcaccgtcgccaccttcaat
ctttcccagctgtctggattcctggaactattagtagagtactttcgaaaatgcctaatt
gacattttcggaattcttatggaatatgaagtgggtgaccccagccaaaaggcgcttgat
caccgtgcagggaagaaagatgacagccagtccctggaagatgattctgggaaagaagaa
gatgatactgagtgtcttgtggaagaggaggaggaggaagaggaggaagaggaagacagt
gaaaagatcgagtcagaggggaagagcagcgctgccctagctgctccagatgcctccgtg
gaccccaaggagacgccaaagcaggccagtaagtttgacaagctgcccataaagattgtc
aaaaagaacaagctgtttgtggtggaccggtctgacaagctgggccgagtgcaggagttc
agcagcgggctcctccactggcagctgggtggtggcgacactacggagcacatccagact
cacttcgagagcaagatggaaatccctcctcgcaggcgtccacctccgcctctaagctcc
acgggtaagaagaaagagctggaaggtaaaggtgattctgaagagcagccagagaaaagt
atcatagccaccatcgatgacgtcttgtctgcccggccaggggctctgcctgaagacacc
aacccaggaccccagagcgacagcggcaagtttccctttggaatccagcaggccaaaagc
caccggaacatcaggctcctggaagacgagcccaggagccgagatgagacgccgctgtgc
accatcgcgcactggcaggactcactggcgaagcgctgcatctgtgtgtcaaacatcgtg
cggagcttgtctttcgtgcctggcaacgacgcagagatgtccaaacacccgggcttggtg
ctgatcctaggaaagctgattctgctgcatcacgagcatccggagagaaagcgggcgcca
cagacctacgagaaggaggaggacgaggacaagggggtggcctgcagcaaagatgagtgg
tggtgggactgcctcgaggtcttgcgggataacaccctggtcacattggcgaacatttcc
gggcagctagacttgtctgcttacacagagagcatctgcttgccgatcctggacggcttg
ctacactggatggtgtgcccgtccgcagaggctcaggacccctttcccactgtggggccc
aactcagtcctgtcgccgcagagacttgtgctggagaccctgtgtaaactcagtatccag
gacaacaacgtggacctgatcttggccacgcctccgtttagtcgtcaggagaaattttat
gctacattagttaggtacgttggggatcgcaaaaatccagtctgtcgagaaatgtccatg
gcgcttttatcgaaccttgcccagggggacacactggcggcgagggcaatagctgtgcag
aaaggaagcattgggaacttgataagcttcctagaggacggggtgacgatggcgcagtac
cagcagagccagcataaccttatgcacatgcagcccccacctctggaaccccctagtgta
gacatgatgtgccgggcggccaaagctctgctggccatggccagagtggacgagaaccgc
tcggagttccttttgcacgagggtcggttgctggacatctcgatatcagctgtcctgaac
tctctggttgcatctgtcatctgtgatgtactgtttcagattgggcagttatga
DBGET
integrated database retrieval system
